PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa019205

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 410aa MW: 46257.1 Da PI: 6.2636

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-29465	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.2e-12	344	389	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq Lsa019205 344 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 389 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.294	338	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-15	341	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.70E-12	342	393	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.7E-15	343	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-13	344	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-9	344	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MDSDLHHHHH QQQLQQPQQQ NMNSGLTRYR SAPSSYFSNL ISNGIYGDDD SDPFFNPRVS 60 TTETDQILSR FTSSTTAVVA GSGGDSTSQQ IMNQIGGYES QFIDSVKQEQ EGVYSESLQQ 120 QQQQQPMIYQ NQFQPQTDHI NRPVSTCSSA MDDSLTTMHL PTNLLRQSSS PAGFFAHLDI 180 DNGYPVMRSM DDFRSSRSNV QNSLLTSTKR LKNEMGFSGN SHTSSGILPR IPENEGKIME 240 MKNHLKDEDY VTGYQSGSWD DSDILSDSFL KELEESDHNK LSSLNSSQNQ NDVGRIRAPT 300 TLVHHLSLPT STAELSAMDK LLQFQDSVPL RSRAKRGCAT HPRSIAERVR RTRISERMRK 360 LQELVPNMDK QTNTADMLDL AVDYIKELQK EAESLSDHHA KCICPHKQKL

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MDSDLHHHHH QQQLQQPQQQ NMNSGLTRYR SAPSSYFSNL ISNGIYGDDD SDPFFNPRVS  60
TTETDQILSR FTSSTTAVVA GSGGDSTSQQ IMNQIGGYES QFIDSVKQEQ EGVYSESLQQ  120
QQQQQPMIYQ NQFQPQTDHI NRPVSTCSSA MDDSLTTMHL PTNLLRQSSS PAGFFAHLDI  180
DNGYPVMRSM DDFRSSRSNV QNSLLTSTKR LKNEMGFSGN SHTSSGILPR IPENEGKIME  240
MKNHLKDEDY VTGYQSGSWD DSDILSDSFL KELEESDHNK LSSLNSSQNQ NDVGRIRAPT  300
TLVHHLSLPT STAELSAMDK LLQFQDSVPL RSRAKRGCAT HPRSIAERVR RTRISERMRK  360
LQELVPNMDK QTNTADMLDL AVDYIKELQK EAESLSDHHA KCICPHKQKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023729761.1	0.0	transcription factor bHLH130-like
TrEMBL	A0A2J6KPF0	0.0	A0A2J6KPF0_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-55	bHLH family protein