PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa019204
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 189aa    MW: 22025.5 Da    PI: 5.7415
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58670353PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1322.6e-10104161663
                HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                + rr+++NRe+ArrsR RK+ +++eL      L + N++  + l++l +  +k   e+
  Lsa019204 104 KRRRMISNRESARRSRIRKQRQLDELLSQLVHLRTDNQSIMEHLKQLAERHEKALEEN 161
                789***********************************99999999988888877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.4E-999163IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.22101164IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.58E-9103152No hitNo description
Gene3DG3DSA:1.20.5.1709.4E-9103153No hitNo description
PfamPF001705.4E-9103161IPR004827Basic-leucine zipper domain
CDDcd147027.00E-15104154No hitNo description
PROSITE patternPS000360106121IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
XPFSSLITNK EKPPLEIGIR NPDLLSDIIS MIRQISEFKY LAPEEYSSPF STNFTIQDPI  60
SVLHMSNFLT NIPEYFSKPP SSVSNNSTSD EADTQQNDII GERKRRRMIS NRESARRSRI  120
RKQRQLDELL SQLVHLRTDN QSIMEHLKQL AERHEKALEE NERLKEETTD IRQKLDEIQQ  180
PNISSEIIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102106RKRRR
2115122RRSRIRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023772496.11e-110basic leucine zipper 43-like
SwissprotQ9FMC22e-28BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A2J6KUW38e-82A0A2J6KUW3_LACSA; Uncharacterized protein
STRINGGLYMA02G13960.28e-40(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.12e-36basic leucine-zipper 58
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]