PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa018848 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 241aa MW: 27940.1 Da PI: 9.6875 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.9 | 1.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+ey++ Lsa018848 9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 95.6 | 7.7e-32 | 81 | 174 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ e+++++s++ e++kLk++ie L++++Rh+ GedLe+L+l+eLq++eqqLe++lk+iR+kKn+l++e+i+el kke++lqe+n++L+kkl+e Lsa018848 81 TAPETETQASWTLESSKLKAKIEVLEKNIRHYDGEDLEQLNLRELQNVEQQLETALKRIRTKKNQLMHESISELHKKERALQERNNSLSKKLKE 174 455677889**********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.721 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-33 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.07E-41 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 2.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.8E-26 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.4 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYATH 60 SSMETILERY ERYSYAEKLL TAPETETQAS WTLESSKLKA KIEVLEKNIR HYDGEDLEQL 120 NLRELQNVEQ QLETALKRIR TKKNQLMHES ISELHKKERA LQERNNSLSK KLKENEKTSE 180 QQIPMLHLPQ HPPQPYPCSV PSFANTSGPF IGAAMREEES VQVQPVSTTM MPLWMIRHIN 240 Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023771445.1 | 1e-179 | truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q42429 | 6e-96 | AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog | ||||
TrEMBL | A0A2J6KWZ1 | 1e-178 | A0A2J6KWZ1_LACSA; Uncharacterized protein | ||||
STRING | XP_004304203.1 | 1e-101 | (Fragaria vesca) |
Publications ? help Back to Top | |||
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