PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa018740

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 359aa MW: 40921.1 Da PI: 8.8002

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-26539	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.9	3.8e-07	235	280	17	62
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 A+rsR RK+++i+eLe+ v++L+ae ++ +l+ l++++ l +e Lsa018740 235 AQRSRVRKLQYIAELERNVQALQAEGSEVSAQLKFLNQQSLILNME 280 89**************************999999999988766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0015	224	283	IPR004827	Basic-leucine zipper domain
CDD	cd14703	8.43E-15	226	273	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.2E-5	235	274	No hit	No description
SuperFamily	SSF57959	2.31E-5	235	277	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MENSKGPSTI RNMYSGKHYS LPPKSPFPSI TPFYPDYTTA SGAKGIPKYR DGNVNSHHHH 60 HHHHQRTSSE SLLVEEQPSW LDELLDEPET PVRRGHRRSS SDSFTYMEAA NANIEHAAQI 120 EYRLRNMNSQ SPPSWGSQDF DLYKDARNAS FYVEHNPMTK NKNRGWDSAN SSRDGFILQN 180 STSLGGSQEV NKTVSPTNEK QDTVESCTQD AHSDSSNTKG SASETDTKRA KQQFAQRSRV 240 RKLQYIAELE RNVQALQAEG SEVSAQLKFL NQQSLILNME NKALKQRLEN LAQEQLIKYL 300 EHEVLEREIG RLRGLYKQQQ QPASEEPIVR HQRSNSRDSV ESQFSKLSLK NKESGPLRI

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MENSKGPSTI RNMYSGKHYS LPPKSPFPSI TPFYPDYTTA SGAKGIPKYR DGNVNSHHHH  60
HHHHQRTSSE SLLVEEQPSW LDELLDEPET PVRRGHRRSS SDSFTYMEAA NANIEHAAQI  120
EYRLRNMNSQ SPPSWGSQDF DLYKDARNAS FYVEHNPMTK NKNRGWDSAN SSRDGFILQN  180
STSLGGSQEV NKTVSPTNEK QDTVESCTQD AHSDSSNTKG SASETDTKRA KQQFAQRSRV  240
RKLQYIAELE RNVQALQAEG SEVSAQLKFL NQQSLILNME NKALKQRLEN LAQEQLIKYL  300
EHEVLEREIG RLRGLYKQQQ QPASEEPIVR HQRSNSRDSV ESQFSKLSLK NKESGPLRI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023730267.1	0.0	uncharacterized protein At4g06598-like
TrEMBL	A0A2J6KNM1	0.0	A0A2J6KNM1_LACSA; Uncharacterized protein
STRING	cassava4.1_009724m	1e-137	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-86	bZIP family protein