PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa018730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||
Protein Properties | Length: 164aa MW: 18759.9 Da PI: 7.7447 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.6 | 7e-09 | 3 | 28 | 29 | 54 |
AP2 29 krfslgkfgtaeeAakaaiaarkkle 54 +r++lg+f tae+Aa+a+++a++ + Lsa018730 3 TRIWLGTFETAEDAARAYDEAARLMC 28 79********************8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.76 | 1 | 37 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.89E-19 | 2 | 39 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.9E-19 | 2 | 37 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-12 | 2 | 39 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-4 | 2 | 29 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-11 | 2 | 43 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
XKTRIWLGTF ETAEDAARAY DEAARLMCGP RARTNFPYNP SLSQSSSSKL LSATLTAKLH 60 RCYMASLQMS KPSIQQQQQK MMNQKQMGST HIGESSPETK PTMVMQHQQP AMEHNSVLQF 120 HSQHHQHQQQ QFFATLEDHH IEQMIEELLH YGSIELCSIG QSQK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023747048.1 | 1e-118 | ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 9e-52 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A2J6JLV4 | 1e-116 | A0A2J6JLV4_LACSA; Uncharacterized protein | ||||
STRING | XP_008220701.1 | 7e-63 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 1e-25 | ERF family protein |
Publications ? help Back to Top | |||
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