PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018657
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 474aa    MW: 51690.5 Da    PI: 8.5712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58689549PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-28546PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.8e-16290335555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                hn+ ErrRRd+iN+++ +L++l+P+a      K +Ka++Le+++eY+k+Lq
  Lsa018657 290 HNQSERRRRDKINQKMKTLQKLVPNA-----NKTDKASMLEEVIEYLKQLQ 335
                9************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-19282348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.549285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-16290339No hitNo description
Gene3DG3DSA:4.10.280.106.3E-18290343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-14290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-17291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSQCVPSWDV DDNPDHNSNV GRLKINLRAS SNSMFPNDVP KLDYEVAELT WKNGQVAMHG  60
LGPPRVVNKA TAAFSKYAWD KPRAAETLEA IVNQATFLPY GKSQMEFYAD DLVPWLHSQT  120
SNLATGSASA SVTMAMDALV PSSNTHLQTL RSAANGSVVP GSTRVASCSG DQSGFMDQRV  180
ARSGAAAAHE WSSCKDQSVS GSETFAGMES GLQMTVETCE REFGGKAFTS ISTGSPENTT  240
SGKRSTESTS PDDNDSVGHS KRQKVSNMEE KKKGKGKGKS SERSRAAAIH NQSERRRRDK  300
INQKMKTLQK LVPNANKTDK ASMLEEVIEY LKQLQAQIHM MSRINMSPMM MPLAMQQQQL  360
QMAMMNPMGM GMGMGIGMGM GMAMPGVMDL NSIGANRSSI PGMPPVFHPS SFMQPTMTSW  420
DMHNTADRVP NQNDPMNAFL ACQSQPMTMD GYTRMAALFQ QMQSQPCYSG PKNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293298ERRRRD
2294299RRRRDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023739754.10.0transcription factor UNE10-like
TrEMBLA0A2J6K2E80.0A0A2J6K2E8_LACSA; Uncharacterized protein
STRINGXP_002511647.11e-143(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-78bHLH family protein