PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa018469

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

CPP

Protein Properties

Length: 732aa MW: 81044.9 Da PI: 7.9228

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58694657	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.1	1.2e-15	371	409	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YC+Cfaag +C+ C+C++C+N+ e Lsa018469 371 CKRCNCKKSKCLKLYCDCFAAGIYCAGPCSCQGCFNRPE 409 79**********************************876 PP
2	TCR	50.7	3.5e-16	453	491	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC+++++ Cs+ C+Ce+C+N Lsa018469 453 RHKRGCNCKKSMCLKKYCECYQSNVGCSDGCRCEGCQNI 491 589***********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.4E-15	369	410	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.552	370	493	IPR005172	CRC domain
Pfam	PF03638	1.6E-11	372	407	IPR005172	CRC domain
SMART	SM01114	2.7E-17	453	494	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.0E-11	455	490	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MGSPEKPNKS TISIIASTTS PQSAAFQDSP IFNYINNLSP IKPVKATSVT QVFSGLNSPP 60 LVFTSPRIHA HQHSTDLKRS SCPLTPLTNS NMNNSEYAPP KVADSTNTKG PMETFNNEDD 120 DKGSDEVASP TFVEQAKEDH VGNLPSCPQP IENDGKNRSF QSSNALVNNI SLEKYDQRVA 180 QHMQPVFGNQ PISTMMEQHS QVGQSQLGKR RRLQFEMSQG KIVENTPGSN SINATESEAV 240 ESSCDNIQNT MNVNLNVSKP SGIGLHLNSI VNARPFGNIS IKSTKGSYSN ALEKSSLMQN 300 DMHCPSISSN SDLDGNVLAK SEEFMHETHP SFSNAKSAKI VEHQEKFDQV QTERPNPKKK 360 RKKTESNGDG CKRCNCKKSK CLKLYCDCFA AGIYCAGPCS CQGCFNRPEY EETVLETRQL 420 IESRNPLAFA PKIVPPKNKI LEDEEQMTPL AGRHKRGCNC KKSMCLKKYC ECYQSNVGCS 480 DGCRCEGCQN IYGAKKGSGM NREMGIEVIN EKLIDSFDDT LKVGPTMSTK SSLPEFYNKP 540 HNLTPQTPSF QHSNHGKDPS KTRIFSGRYL PSPSPESEST FYPPPNYITT PKDSTFDKNL 600 EMIPLDQETE SYQNPNLEFT DEFSPSPGPP LFSSSSMCFR GTLFGGTKPY DIIDDDTPKI 660 LKESFNEVNK VKVRSPNKKR VSPPRIRLHE LGSTSLKSGR KFILKAVPSF PPLTPCIDSK 720 DDNAQNQNDN TR

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MGSPEKPNKS TISIIASTTS PQSAAFQDSP IFNYINNLSP IKPVKATSVT QVFSGLNSPP  60
LVFTSPRIHA HQHSTDLKRS SCPLTPLTNS NMNNSEYAPP KVADSTNTKG PMETFNNEDD  120
DKGSDEVASP TFVEQAKEDH VGNLPSCPQP IENDGKNRSF QSSNALVNNI SLEKYDQRVA  180
QHMQPVFGNQ PISTMMEQHS QVGQSQLGKR RRLQFEMSQG KIVENTPGSN SINATESEAV  240
ESSCDNIQNT MNVNLNVSKP SGIGLHLNSI VNARPFGNIS IKSTKGSYSN ALEKSSLMQN  300
DMHCPSISSN SDLDGNVLAK SEEFMHETHP SFSNAKSAKI VEHQEKFDQV QTERPNPKKK  360
RKKTESNGDG CKRCNCKKSK CLKLYCDCFA AGIYCAGPCS CQGCFNRPEY EETVLETRQL  420
IESRNPLAFA PKIVPPKNKI LEDEEQMTPL AGRHKRGCNC KKSMCLKKYC ECYQSNVGCS  480
DGCRCEGCQN IYGAKKGSGM NREMGIEVIN EKLIDSFDDT LKVGPTMSTK SSLPEFYNKP  540
HNLTPQTPSF QHSNHGKDPS KTRIFSGRYL PSPSPESEST FYPPPNYITT PKDSTFDKNL  600
EMIPLDQETE SYQNPNLEFT DEFSPSPGPP LFSSSSMCFR GTLFGGTKPY DIIDDDTPKI  660
LKESFNEVNK VKVRSPNKKR VSPPRIRLHE LGSTSLKSGR KFILKAVPSF PPLTPCIDSK  720
DDNAQNQNDN TR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	8e-17	374	491	14	121	Protein lin-54 homolog
5fd3_B	8e-17	374	491	14	121	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	212	KRRRL
2	358	362	KKRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023759617.1	0.0	CRC domain-containing protein TSO1-like isoform X1
TrEMBL	A0A2J6LMX0	0.0	A0A2J6LMX0_LACSA; Uncharacterized protein
STRING	XP_010110351.1	1e-117	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	1e-71	Tesmin/TSO1-like CXC domain-containing protein