PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa018342 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 21240 Da PI: 8.2168 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.8e-19 | 6 | 56 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f+tae Aa+a+++a+ ++g Lsa018342 6 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRIWLGTFDTAEAAARAYDQAAILMNG 56 59*****999.**********8.....334**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.61E-23 | 6 | 66 | No hit | No description |
PROSITE profile | PS51032 | 21.957 | 7 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-11 | 7 | 56 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 7 | 65 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-38 | 7 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-20 | 7 | 65 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-10 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MKVQSKKFRG VRQRQWGSWV SEIRHPLLKR RIWLGTFDTA EAAARAYDQA AILMNGQKAK 60 TNFPVTTKTP PEGTHNSPLE IPADTLAAKL RKCCKDPAPS LTCLRLDSDN SHIGVWQKRA 120 GKGSSSGWVM KVELGGKRKE REDEEETTSQ TTSCESLSPT VVEDGGPGGG GDGNIDEENR 180 VAMQMIEELL NCN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-17 | 7 | 64 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023750072.1 | 1e-143 | ethylene-responsive transcription factor WIN1-like | ||||
Swissprot | Q9XI33 | 3e-70 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A2J6M8D9 | 1e-141 | A0A2J6M8D9_LACSA; Uncharacterized protein | ||||
STRING | XP_008466408.1 | 1e-77 | (Cucumis melo) |