PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa018329 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ZF-HD | ||||||||
Protein Properties | Length: 135aa MW: 14404.1 Da PI: 6.2652 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 73.1 | 4.3e-23 | 92 | 135 | 3 | 47 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACg 47 vrY+eClkNhA+s+Gg a+DGCgEfmps geegt +al+C+AC+ Lsa018329 92 MVRYRECLKNHAVSIGGIATDGCGEFMPS-GEEGTLEALTCSACN 135 79**************************9.999***********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.0E-21 | 93 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-15 | 93 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.8E-22 | 94 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.48 | 95 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MEHQGGEMAL PINSTYGGGH GHGHMLHHES APHNHIVPSS AAAVAVAQKQ HQHQLQLPIT 60 NGPTRIVPLP SCSSLEESVQ VPYTNNDDNR MMVRYRECLK NHAVSIGGIA TDGCGEFMPS 120 GEEGTLEALT CSACN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023738137.1 | 4e-94 | zinc-finger homeodomain protein 3-like | ||||
TrEMBL | A0A2J6K5Z9 | 9e-93 | A0A2J6K5Z9_LACSA; Uncharacterized protein | ||||
STRING | EOY25774 | 4e-30 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-21 | homeobox protein 31 |