PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017851

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 490aa MW: 53649.7 Da PI: 5.4153

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-37181	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	376	4.6e-115	109	470	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 lLl+cAe+v+ ++l a++lL ++sel+sp g++ +R+aayf+eAL+ar+ +s ++y l+ ++ + +s++ +al+ ++ +sP++kfsh+taNqaI Lsa017851 109 GLLLQCAECVAVDNLDHANNLLPEISELSSPFGSSPERVAAYFAEALQARIISSYLGTYTPLSIKRLALVQSQKICNALQSYNSISPFIKFSHFTANQAI 208 58************************************************************************************************ PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rledleleeLrvkpgE 200 +a+ege+ vHiiD+di+qGlQWp L++ LasRp++ slRiTgvgs s e le+tg+rL++fA++lg+pfef++l k ++++ + +L v+pgE Lsa017851 209 FQALEGEDGVHIIDLDIMQGLQWPGLFHILASRPRKIKSLRITGVGS----SIELLEATGRRLHDFANSLGLPFEFTPLEGKigNINSDLTTQLGVRPGE 304 *******************************************....9**********************94443366666789**** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 +++V++++ h l+d ++s +L+l+ l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l +l +e+ er++vE++l+g ei+n+va Lsa017851 305 TMVVHWMH--HCLYDITGSDFG----TLRLLALLKPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLESENVERHTVEQQLFGCEIKNIVAV 397 **99..777766777777....******************.789******************************************** PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g +r+ + + +e+W e l ++GFkpv+l + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+ Lsa017851 398 GGPKRTGEVK-VERWGEELVRVGFKPVSLAGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 470 998887.9***********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.292	81	450	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-112	109	470	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
XTTSLRLQVS ASTITITIST TSIMLQSLLL QHPLTTTNVS SPNSSPVTVN ASTMNTNTSK 60 RAINEGNNDV DDDPSSHHHK RRNLEDKPEE HEDQSILVEA ESSGLRLLGL LLQCAECVAV 120 DNLDHANNLL PEISELSSPF GSSPERVAAY FAEALQARII SSYLGTYTPL SIKRLALVQS 180 QKICNALQSY NSISPFIKFS HFTANQAIFQ ALEGEDGVHI IDLDIMQGLQ WPGLFHILAS 240 RPRKIKSLRI TGVGSSIELL EATGRRLHDF ANSLGLPFEF TPLEGKIGNI NSDLTTQLGV 300 RPGETMVVHW MHHCLYDITG SDFGTLRLLA LLKPKLITIV EQDLSHGGSF LGRFVEALHY 360 YSALFDALGD GLESENVERH TVEQQLFGCE IKNIVAVGGP KRTGEVKVER WGEELVRVGF 420 KPVSLAGNPA AQASLLLGMF PWKGYTLVEE NGCLKLGWKD LSLLTASAWQ PPIFNEVNDG 480 VGSTVEIETL

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

XTTSLRLQVS ASTITITIST TSIMLQSLLL QHPLTTTNVS SPNSSPVTVN ASTMNTNTSK  60
RAINEGNNDV DDDPSSHHHK RRNLEDKPEE HEDQSILVEA ESSGLRLLGL LLQCAECVAV  120
DNLDHANNLL PEISELSSPF GSSPERVAAY FAEALQARII SSYLGTYTPL SIKRLALVQS  180
QKICNALQSY NSISPFIKFS HFTANQAIFQ ALEGEDGVHI IDLDIMQGLQ WPGLFHILAS  240
RPRKIKSLRI TGVGSSIELL EATGRRLHDF ANSLGLPFEF TPLEGKIGNI NSDLTTQLGV  300
RPGETMVVHW MHHCLYDITG SDFGTLRLLA LLKPKLITIV EQDLSHGGSF LGRFVEALHY  360
YSALFDALGD GLESENVERH TVEQQLFGCE IKNIVAVGGP KRTGEVKVER WGEELVRVGF  420
KPVSLAGNPA AQASLLLGMF PWKGYTLVEE NGCLKLGWKD LSLLTASAWQ PPIFNEVNDG  480
VGSTVEIETL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-165	113	471	25	380	Protein SCARECROW
5b3h_A	1e-165	113	471	24	379	Protein SCARECROW
5b3h_D	1e-165	113	471	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023732144.1	0.0	scarecrow-like protein 23
Swissprot	Q9FHZ1	0.0	SCL23_ARATH; Scarecrow-like protein 23
TrEMBL	A0A2J6MCV5	0.0	A0A2J6MCV5_LACSA; Uncharacterized protein
STRING	XP_006481359.1	0.0	(Citrus sinensis)
STRING	XP_006429765.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	1e-176	GRAS family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yoon EK, et al. Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots. Mol Plant, 2016. 9(8): p. 1197-1209 [PMID:27353361]