PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017817
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 722aa    MW: 81370.2 Da    PI: 6.2648
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58695252PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-43963PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.68.3e-1133497201374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL  cA+a++++d++ a  lL+++++++sp+gd mqRla+yf  +L+ar+a+s++e+yk+l  ++ts    +++l+a++l+  ++P++k+s++  N+
  Lsa017817 349 LRTLLSLCAQAIAANDQRSAVDLLKQIRDNSSPTGDGMQRLAHYFSIGLEARMAGSGTEIYKTLLFRPTS---AVDVLKAYHLYLSCCPFIKISNFFSNK 445
                5789999**************************************************************9...9************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                +Il  ++++++vHi+Df+i +G+QWp+++q L++Rp+gpp+lRiTg++ p +g   ++++eetg+rLa++Ae+++vpf+f++ +a+++e++++e+L++++
  Lsa017817 446 TILHTTQNKKKVHIVDFGILYGFQWPCFIQRLSTRPGGPPELRITGIDFPCPGfrPSQRVEETGRRLANYAETFNVPFKFKA-IAQKWETITIEDLELDT 544
                **************************************************99999***************************.7**************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                +E+l+Vn++++  +llde+v ++s+r++v++l+++++P++++    + ++n++ F +rf eal ++s+lfd++ea+++re  er+ +E+ + g+e++nv+
  Lsa017817 545 EETLIVNCAYRFRYLLDETVMVDSPRNKVVNLIRKMKPDMFIQGVVNGSYNAPFFITRFREALFFFSSLFDMIEASVGREVLERMLIEKGIWGQEAMNVI 644
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                aceg er++r et+++W+ r ++aGF+++pl++++ k a    r  + + + ++e+ +++++gWk+r +v++S+W+
  Lsa017817 645 ACEGGERIARPETYKQWQVRNMRAGFRQLPLNQEILKMAMERARSRYHRDFGIDEDGHWMLQGWKGRIMVALSCWK 720
                ********************************************999899*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.444323700IPR005202Transcription factor GRAS
PfamPF035142.9E-110349720IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MVMDGLWKAD YRLSTLNAAK FNGSATVLSD QKFLNAMSLN ETFLDRNSTT HTPELPDLGL  60
RRFSPSSSSN NEGDLHEDFD LSDVVFKYIN QMLMEEDIEE KTCMLHESAA LQAAEKSFYD  120
ALMVNDPPFC SPHPTVPLYD NDGREEITLT DYNSFISGTS SLSCDVSDYD SPLVPNVSIN  180
LDSQSRSQSS YCSSSCNSNG IDSFTDSPLS IQSVSDILGS SRSDLQFQKD IGGLSRFLLS  240
NENKEEANDL VIKAENKQET NSIPERTRGK KNPYPKDVDD DGRTSKQSAV YTEPTVRSKM  300
FDDVLLCNGG KNHLHCDVVP NGVNGVQQKG NGGKGGRGKK GVKKDVVDLR TLLSLCAQAI  360
AANDQRSAVD LLKQIRDNSS PTGDGMQRLA HYFSIGLEAR MAGSGTEIYK TLLFRPTSAV  420
DVLKAYHLYL SCCPFIKISN FFSNKTILHT TQNKKKVHIV DFGILYGFQW PCFIQRLSTR  480
PGGPPELRIT GIDFPCPGFR PSQRVEETGR RLANYAETFN VPFKFKAIAQ KWETITIEDL  540
ELDTEETLIV NCAYRFRYLL DETVMVDSPR NKVVNLIRKM KPDMFIQGVV NGSYNAPFFI  600
TRFREALFFF SSLFDMIEAS VGREVLERML IEKGIWGQEA MNVIACEGGE RIARPETYKQ  660
WQVRNMRAGF RQLPLNQEIL KMAMERARSR YHRDFGIDED GHWMLQGWKG RIMVALSCWK  720
PV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-4635672125379Protein SCARECROW
5b3h_D1e-4635672125379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023757261.10.0scarecrow-like protein 30
RefseqXP_023757262.10.0scarecrow-like protein 30
RefseqXP_023757263.10.0scarecrow-like protein 30
RefseqXP_023757264.10.0scarecrow-like protein 30
RefseqXP_023757265.10.0scarecrow-like protein 30
RefseqXP_023757266.10.0scarecrow-like protein 30
TrEMBLA0A2J6LSL90.0A0A2J6LSL9_LACSA; Uncharacterized protein
STRINGXP_009611175.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-170GRAS family protein