PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017788
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 163aa    MW: 18370.2 Da    PI: 7.3462
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58668484PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.9e-161458755
        AP2  7 rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               r+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a+++++g
  Lsa017788 14 RQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAALAYDEAALRFKG 58
               6888.**********93....36***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.893166IPR001471AP2/ERF domain
PRINTSPR003671.6E-71021IPR001471AP2/ERF domain
CDDcd000186.59E-161467No hitNo description
SuperFamilySSF541716.54E-191467IPR016177DNA-binding domain
PfamPF008474.8E-101458IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-281467IPR001471AP2/ERF domain
SMARTSM003807.7E-291472IPR001471AP2/ERF domain
PRINTSPR003671.6E-73248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MKGTKGGDTI EEXRQRPWGK WAAEIRDPQK AARVWLGTFE TAEAAALAYD EAALRFKGTK  60
AKLNFPERVQ GRTELGYFIT RPQLQMPPTF LPNSHLRPPS QSTYPNLLDY TQFLQGANER  120
RMSTTDMNDL NCTSSSSTDM GSSSSVSPSQ YWQDYDPDPK TYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-23770367ATERF1
3gcc_A7e-23770367ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023757718.11e-103ethylene-responsive transcription factor ERF114-like
TrEMBLA0A2J6MH081e-103A0A2J6MH08_LACSA; Uncharacterized protein
STRINGXP_008791015.12e-43(Phoenix dactylifera)
STRINGTraes_2AL_6B6086A7C.27e-42(Triticum aestivum)