PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017742

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 340aa MW: 38117.3 Da PI: 6.2312

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58690249	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5.3e-10	196	254	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ + l++e+ Lsa017742 196 KRAKRILANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTSCLTAEN 254 9*********************************************9998888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.7E-17	192	256	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.024	194	257	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.03E-11	196	247	No hit	No description
Pfam	PF00170	8.2E-9	196	251	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.4E-10	196	250	No hit	No description
CDD	cd14703	1.23E-25	197	246	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MENDKSLNLG GNLLPPFGSQ LVYSPPSGNN FSIKSEPLPP IGPSGHTTSG DSGRFSHDVN 60 RMPDNPPKTT GHRRAHSEIL TLPDDISFDS DLGVVGGFEG PSFSDETEED LFSMFLDMDK 120 FNSSSATSTF QASEAFTVPS SSERPRVRHQ HSQSMDGSST MKTEMLTSGP EETLPSDAKK 180 AMSATKLSEL ALVDPKRAKR ILANRQSAAR SKERKMRYIA ELERKVQTLQ TEATSLSAQL 240 TLLQRDTSCL TAENSELRLR LQTMEQQVHL QDALNDALKE EIQHLKSITM MNFGSNQQFQ 300 FHPNNTMLTE QQFQQLQIHS QSHKHQHQFQ HYQQQHDTEC

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023751649.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-129	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A2J6M525	0.0	A0A2J6M525_LACSA; Uncharacterized protein
STRING	XP_006478733.1	1e-152	(Citrus sinensis)
STRING	XP_006442989.1	1e-152	(Citrus clementina)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]