PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017701
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 336aa    MW: 36873.1 Da    PI: 8.3281
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-50376PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.2e-18233266134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                Cs+C + kTp+WR gp g ktLCnaCG+++++ +
  Lsa017701 233 CSHCLVQKTPQWRAGPLGAKTLCNACGVRFKSGR 266
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.7E-808306IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.227227263IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-14227277IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-14229290No hitNo description
Gene3DG3DSA:3.30.50.109.9E-14231264IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.86E-14232289No hitNo description
PfamPF003201.3E-15233266IPR000679Zinc finger, GATA-type
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEYCVEEASK TSSTGVKLNH FTPSFSDDFW AVNGVSGDDF FVDGLLDFSS DGSFLEEDDN  60
SQVLKHTDDS KNDKISSLSP VKIVNNEDKA TTIVSDTELC FPVDDVADLE WVSQFVEDSF  120
SGGGYFLTCS ERKPETETVN LVAVNPSFRN LVQKKARSKR SRTGGRVWSL RLSSSLTDSS  180
NSCSSSSSCT SNALLPTQEI LGRPPTVKRQ KKKKPVATAD TPGSGWPQQP RRCSHCLVQK  240
TPQWRAGPLG AKTLCNACGV RFKSGRLFPE YRPAGSPNFS SEVHSNNHRK VLEMRQKKEA  300
EEGGPPPPVA GSGKKHLTRS REHQNKVGSR IDVNPV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023764828.10.0GATA transcription factor 5
RefseqXP_023764829.10.0GATA transcription factor 5
TrEMBLA0A2J6LBE30.0A0A2J6LBE3_LACSA; GATA transcription factor
STRINGXP_004287842.11e-70(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.27e-50GATA transcription factor 5