PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017566

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 746aa MW: 84426.2 Da PI: 6.4213

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-21302	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	382.7	4.4e-117	374	744	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+av+++d ++a++lL++++++asp gd +qRla++f+++L+arla+++s++ + l +++ts + ++a++l++ sP+ k+s+ + N+ Lsa017566 374 LRSLLVTCAQAVAADDRRNASELLKQIKQHASPFGDGNQRLAHCFANGLEARLAGTGSQIHRGLVSKKTS---AGDYIKAYHLYVASSPFRKISNYASNR 470 689***********************************************************999999...99********************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +I + + +++rvHiiDf+i +G+QWp+++q +++Rp+gpps+R+Tg++ p++g +e++eetg rL+++A++++vpfe+++ +akr+e++++e+L++++ Lsa017566 471 TIQDMALNATRVHIIDFGILYGFQWPTFIQRISQRPGGPPSVRLTGIEFPQPGfrPAETIEETGARLKEYANHFKVPFEYTP-IAKRWECVNVEDLKIEK 569 *************************************************99*************************.7************ PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 gE l+Vn++++ ++llde+v ++s+r+ vL+lvk+++P+ +++ + ++n++ F++rf eal ++salfd+le+++pre er+ +E el+g+ei+nvv Lsa017566 570 GEFLVVNCMYRSKNLLDETVGVDSARNVVLNLVKKINPNAFIHGILNGSYNAPFFVTRFREALFHFSALFDMLETNVPRERPERKLLEGELFGKEIMNVV 669 ************************************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aceg er+er et+++W+ r +aGF +vp+s ++k a+ + +++d + ++ ++++l++gWk+r ++++S+W+ Lsa017566 670 ACEGWERIERPETYKQWHVRNLRAGFVSVPFSRAIMKLAREKVGLYHKD-FLIDFDNDWLLQGWKGRIIYAISCWK 744 *******************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.311	348	725	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-114	374	744	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence Send to blast
MDPGPGRFGS LADGNGFQFG NQSVTVLPDE KALDTRSRFD NTFSIYNPVN DVNAYQNQLN 60 FRGIQFDPPT NSSSPVVTSS LDDELHEDCD LSDAILGYIS QVLMEEDMED KSCLLYESLD 120 LQAAEKSFYD VLVEKYPPSP SLSYDEGLFS VDQYIQSPHD SPLSHHNNTY VGKFTNGSID 180 YLHDDSNLRN IGDRNVPCTS VSSSNSGNNI IDVDSHPTTF QVSEICDENQ MTMTMNFNKG 240 VEEANKFLPS NNRLLADFNG GGAYAFLPKS QDTESDELRT IPTRVRKIPS DIGTEERSIK 300 QAAIYGDYTV RTKEIDLMLL DSMGEGDVAL RMFRNTLQNE TNKDKLKDKE PKCLTRSRRK 360 GVRKKQNKKE VIDLRSLLVT CAQAVAADDR RNASELLKQI KQHASPFGDG NQRLAHCFAN 420 GLEARLAGTG SQIHRGLVSK KTSAGDYIKA YHLYVASSPF RKISNYASNR TIQDMALNAT 480 RVHIIDFGIL YGFQWPTFIQ RISQRPGGPP SVRLTGIEFP QPGFRPAETI EETGARLKEY 540 ANHFKVPFEY TPIAKRWECV NVEDLKIEKG EFLVVNCMYR SKNLLDETVG VDSARNVVLN 600 LVKKINPNAF IHGILNGSYN APFFVTRFRE ALFHFSALFD MLETNVPRER PERKLLEGEL 660 FGKEIMNVVA CEGWERIERP ETYKQWHVRN LRAGFVSVPF SRAIMKLARE KVGLYHKDFL 720 IDFDNDWLLQ GWKGRIIYAI SCWKSA

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence Send to blast

MDPGPGRFGS LADGNGFQFG NQSVTVLPDE KALDTRSRFD NTFSIYNPVN DVNAYQNQLN  60
FRGIQFDPPT NSSSPVVTSS LDDELHEDCD LSDAILGYIS QVLMEEDMED KSCLLYESLD  120
LQAAEKSFYD VLVEKYPPSP SLSYDEGLFS VDQYIQSPHD SPLSHHNNTY VGKFTNGSID  180
YLHDDSNLRN IGDRNVPCTS VSSSNSGNNI IDVDSHPTTF QVSEICDENQ MTMTMNFNKG  240
VEEANKFLPS NNRLLADFNG GGAYAFLPKS QDTESDELRT IPTRVRKIPS DIGTEERSIK  300
QAAIYGDYTV RTKEIDLMLL DSMGEGDVAL RMFRNTLQNE TNKDKLKDKE PKCLTRSRRK  360
GVRKKQNKKE VIDLRSLLVT CAQAVAADDR RNASELLKQI KQHASPFGDG NQRLAHCFAN  420
GLEARLAGTG SQIHRGLVSK KTSAGDYIKA YHLYVASSPF RKISNYASNR TIQDMALNAT  480
RVHIIDFGIL YGFQWPTFIQ RISQRPGGPP SVRLTGIEFP QPGFRPAETI EETGARLKEY  540
ANHFKVPFEY TPIAKRWECV NVEDLKIEKG EFLVVNCMYR SKNLLDETVG VDSARNVVLN  600
LVKKINPNAF IHGILNGSYN APFFVTRFRE ALFHFSALFD MLETNVPRER PERKLLEGEL  660
FGKEIMNVVA CEGWERIERP ETYKQWHVRN LRAGFVSVPF SRAIMKLARE KVGLYHKDFL  720
IDFDNDWLLQ GWKGRIIYAI SCWKSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-51	358	743	3	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023742525.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2J6JWF2	0.0	A0A2J6JWF2_LACSA; Uncharacterized protein
STRING	XP_006480839.1	0.0	(Citrus sinensis)
STRING	XP_006429104.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein