PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017510
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 357aa    MW: 39065.5 Da    PI: 6.1907
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684784PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-20137188256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                +y+GVr+++ +g+++AeIrdps+ g  +r++lg+++ta +Aaka+++a+ kl+g+
  Lsa017510 137 HYRGVRQRP-WGKFAAEIRDPSKKG--TRVWLGTYDTAIDAAKAYDKAAFKLRGN 188
                8********.**********97744..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-32136196IPR001471AP2/ERF domain
CDDcd000181.42E-20136195No hitNo description
SMARTSM003804.0E-38137201IPR001471AP2/ERF domain
PfamPF008471.7E-13137187IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22137197IPR016177DNA-binding domain
PROSITE profilePS5103224.026137195IPR001471AP2/ERF domain
PRINTSPR003672.5E-13138149IPR001471AP2/ERF domain
PRINTSPR003672.5E-13177197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MASLEEFSAL DLIRQHLLID DSSFLQEYSI LSDHHCNNTT HKSTVVFPLT SSSSSSTSSS  60
SSPTSSVIDH TRTVSGHQFE FRVEPEPMLQ SSSSDITGKF SNNGFNQRKP SVNISFPPAI  120
EKFDVVVKEK EFEERKHYRG VRQRPWGKFA AEIRDPSKKG TRVWLGTYDT AIDAAKAYDK  180
AAFKLRGNKA ILNFPLEIGN SEEAAETETR VVTSNSRKRA AGKSELEVRG SRKEVKVEPD  240
TAKYGGDKAD AAVGSLTFEK VPLLSSSYPA MDFTSGCMIR SNGPKSVAGQ SVVEVRGSRK  300
DVKVEPETAE CDGDKADAAV GSTISPTNWT PDDNSMFDVT LLSPYPTMDF TSGCMVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-31136198163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-31136202470ATERF1
3gcc_A5e-31136202470ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023757332.10.0ethylene-responsive transcription factor 5-like
TrEMBLA0A2J6LSG90.0A0A2J6LSG9_LACSA; Uncharacterized protein
STRINGPGSC0003DMT4000279375e-53(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-25ERF family protein