PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017431

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

ERF

Protein Properties

Length: 342aa MW: 37689.6 Da PI: 5.8294

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-31243	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51	3.5e-16	88	133	2	51
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaark 51 + +GVr +k +g+W+AeIrd + + kr++lg++ taeeA ka+ ++ Lsa017431 88 KLTGVRLRK-WGKWAAEIRDpF-----SrKRIWLGTYNTAEEASKAYTTKKQ 133 678**99.******55.....34***************976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.92E-18	87	128	No hit	No description
PROSITE profile	PS51032	17.319	88	147	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-11	88	142	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-15	88	135	IPR016177	DNA-binding domain
PRINTS	PR00367	1.6E-7	89	100	IPR001471	AP2/ERF domain
Pfam	PF00847	5.8E-9	89	129	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.5E-18	90	133	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-7	111	127	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MAEHRVSKRL RNYVTNKEQP EFTGKSLRKI RVICSDPEAT DSSSDEADSG ERSSPRRIVC 60 EIVIGVKSDE AEEPVERKDS ADQTGKKKLT GVRLRKWGKW AAEIRDPFSR KRIWLGTYNT 120 AEEASKAYTT KKQEFQARLS ASAPIRPKSD GESSTQVSQE ADHYSTEGEE KETRLSGRVV 180 PDHAPIAKSK VVHWKKWDRW GANVHNPVIN SNIQSDDTCD AEEEASNTLQ SMKMGLRPGY 240 MAPFGSESGS SRKSSKTEKS GGGGGGDETI SGTTTTTTSM EVSTEEKGRN TATEEGQLSE 300 NVDTEEGNKP PWLGLGIGML VIDNNGNLLG QFSRLDDDLR IC

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MAEHRVSKRL RNYVTNKEQP EFTGKSLRKI RVICSDPEAT DSSSDEADSG ERSSPRRIVC  60
EIVIGVKSDE AEEPVERKDS ADQTGKKKLT GVRLRKWGKW AAEIRDPFSR KRIWLGTYNT  120
AEEASKAYTT KKQEFQARLS ASAPIRPKSD GESSTQVSQE ADHYSTEGEE KETRLSGRVV  180
PDHAPIAKSK VVHWKKWDRW GANVHNPVIN SNIQSDDTCD AEEEASNTLQ SMKMGLRPGY  240
MAPFGSESGS SRKSSKTEKS GGGGGGDETI SGTTTTTTSM EVSTEEKGRN TATEEGQLSE  300
NVDTEEGNKP PWLGLGIGML VIDNNGNLLG QFSRLDDDLR IC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023756069.1	0.0	uncharacterized protein LOC111904548

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68550.2	9e-18	ERF family protein