PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017385
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 353aa    MW: 38225.1 Da    PI: 7.2744
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58686689PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.51.1e-21211273163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                e+elkrerrkq+NRe+ArrsR+RK+ae eeL ++v++L++eN +Lk+e+++l+ ++++lk ++
  Lsa017385 211 ERELKRERRKQSNRESARRSRLRKQAEAEELGTRVESLTNENLTLKSEINRLTVNSSNLKLQN 273
                89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.4E-27195IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.0E-8115196No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-14208271No hitNo description
PfamPF001705.0E-20211273IPR004827Basic-leucine zipper domain
SMARTSM003381.0E-18211275IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.61213276IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.75E-10214270No hitNo description
CDDcd147022.32E-19216263No hitNo description
PROSITE patternPS000360218233IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MANCEEAKNC KPEVTSSSPP QEQEQQQQQQ TSHVYPDWGA MQAYYGRRMA IPHYFNSSVT  60
SGHTPPPYMW GPLQHMMPPY AAMYPHAGVY AHPGVTVAAS PMHVDSPAKS SGNSDRGLIK  120
KLKGFDGLAM SIGNENGISH SGETEGSSEG SDGNTTEGAK SGQKRSRGGS STSSEIGKTD  180
DQLPSTNENG SLKKVKSITV APPNVTMFQN ERELKRERRK QSNRESARRS RLRKQAEAEE  240
LGTRVESLTN ENLTLKSEIN RLTVNSSNLK LQNAKLMEKL KKSQIEQDTE DPRLDKKGLT  300
LSTANLLSRV DNGSGTGTDT DTDTDTDTDT VGSGATLRQL LDASPRADAV AAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227233RRSRLRK
2227234RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023729126.10.0common plant regulatory factor 1-like
RefseqXP_023729127.10.0common plant regulatory factor 1-like
RefseqXP_023729128.10.0common plant regulatory factor 1-like
RefseqXP_023729129.10.0common plant regulatory factor 1-like
RefseqXP_023729130.10.0common plant regulatory factor 1-like
SwissprotQ990891e-107CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A2J6KR030.0A0A2J6KR03_LACSA; Uncharacterized protein
STRINGXP_002511955.11e-113(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.11e-43G-box binding factor 2
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]