PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017360

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB

Protein Properties

Length: 407aa MW: 45579.9 Da PI: 6.8338

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58685037	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.9e-18	43	90	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd++++ G g+W++ ++ g++R++k+c++rw +yl Lsa017360 43 KGPWTPEEDQKLVDYIERNGHGSWRALPSLAGLNRCGKSCRLRWTNYL 90 79********************************************97 PP
2	Myb_DNA-binding	57.8	2.5e-18	96	141	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l+++++ lG++ W++Ia +++ gRt++++k++w+++l Lsa017360 96 RGNFTEDEEKLIIHLHSHLGNK-WSSIATHLP-GRTDNEIKNYWNTHL 141 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.337	38	90	IPR017930	Myb domain
SuperFamily	SSF46689	2.2E-31	40	137	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-14	42	92	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-16	43	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-24	44	97	IPR009057	Homeodomain-like
CDD	cd00167	5.82E-11	45	90	No hit	No description
PROSITE profile	PS51294	28.661	91	145	IPR017930	Myb domain
SMART	SM00717	2.4E-17	95	143	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-17	96	141	IPR001005	SANT/Myb domain
CDD	cd00167	3.19E-13	98	141	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.8E-27	98	145	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
TEITYKRPFK PTSPFLRNKQ RQCKINKIMM GRSSSSDENG LKKGPWTPEE DQKLVDYIER 60 NGHGSWRALP SLAGLNRCGK SCRLRWTNYL RPDIKRGNFT EDEEKLIIHL HSHLGNKWSS 120 IATHLPGRTD NEIKNYWNTH LKKKLLQMGI DPVTHQPRTD HLDILANLPQ LLAIAANNLG 180 ATNLFNPSFD MNLNALMSQS DATQIAKFQL LQNILQVLST NSTPTNTSSI PQNLDPFYAV 240 QLSEYLRLNP QHLQNLQDLA MNIAPSSAPN LHPFGTHDFI SPSYPNLHLD HEQGSKVFSG 300 QDCRTNGNIT LGKEEYVDFE SIPPLVPASP DHLSHSNGGN GQSPGGDVNT DQLGSVNILK 360 QSDHLSSSNP TSTSTTLDPN WQEFMDDEAS GCYWKEIIER GSSPPWS

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

TEITYKRPFK PTSPFLRNKQ RQCKINKIMM GRSSSSDENG LKKGPWTPEE DQKLVDYIER  60
NGHGSWRALP SLAGLNRCGK SCRLRWTNYL RPDIKRGNFT EDEEKLIIHL HSHLGNKWSS  120
IATHLPGRTD NEIKNYWNTH LKKKLLQMGI DPVTHQPRTD HLDILANLPQ LLAIAANNLG  180
ATNLFNPSFD MNLNALMSQS DATQIAKFQL LQNILQVLST NSTPTNTSSI PQNLDPFYAV  240
QLSEYLRLNP QHLQNLQDLA MNIAPSSAPN LHPFGTHDFI SPSYPNLHLD HEQGSKVFSG  300
QDCRTNGNIT LGKEEYVDFE SIPPLVPASP DHLSHSNGGN GQSPGGDVNT DQLGSVNILK  360
QSDHLSSSNP TSTSTTLDPN WQEFMDDEAS GCYWKEIIER GSSPPWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-29	41	145	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023750952.1	0.0	transcription factor MYB41-like
Swissprot	Q9S9Z2	1e-82	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A2J6M6P1	0.0	A0A2J6M6P1_LACSA; Uncharacterized protein
STRING	VIT_16s0039g01710.t01	1e-109	(Vitis vinifera)
STRING	EOY10110	1e-109	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	5e-92	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]