PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017336
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family AP2
Protein Properties Length: 399aa    MW: 44693.4 Da    PI: 7.7338
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58689206PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-55076PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-17163212155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Lsa017336 163 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 212
                78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-15163220IPR016177DNA-binding domain
PfamPF008473.0E-9163212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-17164220IPR001471AP2/ERF domain
PROSITE profilePS5103217.649164220IPR001471AP2/ERF domain
SMARTSM003802.7E-31164226IPR001471AP2/ERF domain
CDDcd000181.53E-24164219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MLDLNLSIVH EDLVTDFRGD VEESATSNSS VVNAEGCNSS NVVDGGDEDS VSAIGDEDSF  60
HCFNFDILKV GDTGALLSNS NDEDRTSQTQ AQTRSEFVTR SLFPMSHGGG SFNQGQQMNS  120
LLLFPNNKEL QEMRSIPVQQ QKPTIQQSQV GKKSRRGPRS RSSQYRGVTF YRRTGRWESH  180
IWDCGKQVYL GGFDTAHSAA RAYDRAAIKF RGVDADINFN LCDYEEDMNQ QIKNLSKEEF  240
VHLLRRHSNG FSRGNSKYRG LTINKFGKGE TFSATHFGND HNLDLNLGIS TPTSLGKTST  300
RNGNLDHMQQ LNHGLHDIRR LQTDNGATKT LKGLPMISDR RPPWSAMHPT FLPHHEVGTR  360
NSGMINGGCF QGPTNWAWQL HGQNSQLRQP QTLWITTTR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748813.10.0ethylene-responsive transcription factor RAP2-7-like
TrEMBLA0A2J6JHQ90.0A0A2J6JHQ9_LACSA; Uncharacterized protein
STRINGSolyc06g075510.2.16e-85(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.13e-60related to AP2.7