PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017255

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 362aa MW: 41126.7 Da PI: 7.6927

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-42236	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.4	4.7e-11	76	117	3	41
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 ++k +rr+++NReAAr+sR+RKka++++Le+ k ++Le+e Lsa017255 76 SDKLQRRLAQNREAARKSRLRKKAYVQQLETgrlKLAQLEQE 117 68***************************9844445555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.4E-7	74	123	No hit	No description
SMART	SM00338	1.1E-6	74	136	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.059	76	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.5E-8	77	116	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.04E-6	78	120	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-23	165	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MASTSTQFAT SRRMGIFEPL HHIGMWDDDT TNFGCDIVTP NTASSSMINR LPNKTDYISQ 60 ESIGPSSDNE AAKNMSDKLQ RRLAQNREAA RKSRLRKKAY VQQLETGRLK LAQLEQELER 120 ARQQRVYGGL LNTSNGLLPN NVNPGIAAFE MAYDLWVAEQ QKKDNELKDV LQSHVSELEL 180 RIFVDSGLNH YYELFQLKAN AAKADVFYTM NGLWRTPLER FFQWLGGPRP SELLYILMPQ 240 LEPLSNAQLM SVSTLKHSCK QAEDALSLGM EKLQQNLAQG ITIDITEVGS YNAQMTLAME 300 RLEGIENFLN QADHLRQQVL QQMSRILTAH QAARGLLALG EYFQRLRALN SLWSARFREP 360 TS

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MASTSTQFAT SRRMGIFEPL HHIGMWDDDT TNFGCDIVTP NTASSSMINR LPNKTDYISQ  60
ESIGPSSDNE AAKNMSDKLQ RRLAQNREAA RKSRLRKKAY VQQLETGRLK LAQLEQELER  120
ARQQRVYGGL LNTSNGLLPN NVNPGIAAFE MAYDLWVAEQ QKKDNELKDV LQSHVSELEL  180
RIFVDSGLNH YYELFQLKAN AAKADVFYTM NGLWRTPLER FFQWLGGPRP SELLYILMPQ  240
LEPLSNAQLM SVSTLKHSCK QAEDALSLGM EKLQQNLAQG ITIDITEVGS YNAQMTLAME  300
RLEGIENFLN QADHLRQQVL QQMSRILTAH QAARGLLALG EYFQRLRALN SLWSARFREP  360
TS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023760850.1	0.0	transcription factor TGA4-like
Swissprot	Q39162	1e-135	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A2J6LKJ3	0.0	A0A2J6LKJ3_LACSA; Uncharacterized protein
STRING	XP_009588814.1	1e-157	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]