PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017252
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 584aa    MW: 65049.9 Da    PI: 5.2914
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58696770PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-48765PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.41.4e-1312165841373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l+++Ll+cA+a+++++   a++l++ ++ l+s +g+p+qRl ay++e+L arl+ s+s +yk+l+++e +     e ++++++++e++P++kf++l aN 
  Lsa017252 216 LKQVLLACAKAIAENESITAEWLISMVRPLVSVSGEPTQRLGAYLMEGLVARLSASGSFIYKSLRCKEPT---GPELFSYMHMLYEACPYFKFGYLSANG 312
                5799*****************************************************************9...9************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                aI ea+++e+r+HiiDf+i qG+QW++L+qaLa+ p gpp+lRiTg++++++   +   le +g+rL+k+Ae++++pfef+ l   + +++e +++r++p
  Lsa017252 313 AIAEAMKNEDRIHIIDFQIAQGGQWATLIQALAALP-GPPRLRITGIDDSRNAyaRGGGLEVVGQRLTKLAEACKLPFEFQGL-PVSGSEIEARHFRIDP 410
                **********************************86.569*********988899999************************5.8889************ PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                gEalaVn+++ lh+l+desv+ +++rd++L+l+k+lsPkvv++veqea+ n+++Fl+rf eal+yysa+f+s+++++pr++++ri+vE+++l+ eivn++
  Lsa017252 411 GEALAVNCAFVLHHLPDESVDPQNHRDRMLRLIKGLSPKVVTLVEQEANVNTAPFLHRFQEALSYYSAMFESIDVTVPRDHKDRINVEQHCLAGEIVNII 510
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                acegaer+erhe l+kWr+r+ +aGF+p+pls+++++++k+ll ++ +  yr+ee++g+l+lgW++r Lvs +aW
  Lsa017252 511 ACEGAEREERHELLGKWRSRFAMAGFTPYPLSSYVNATIKTLLDNYCD-KYRLEERDGALFLGWMNRDLVSSCAW 584
                **********************************************95.5************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.703190566IPR005202Transcription factor GRAS
PfamPF035144.7E-129216584IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
XDGKALQEKA AKKAEKAAGS SDLKKPHALV RSTAWTVDXT EPSSSLHFLP LYKCNSTQLT  60
LWIMLPSTFK ITPITSPLST KGMNQVGSED XLTARAWMEA SSNQPYYWRP TQNLNLYSGD  120
VSQGSQFSNN STSSVSFSTN GSPVSVSLQE SHPDTDYNSQ DVDDLQLRLR ELETVMLGTD  180
EDFQDLFDVS SALTAATAWR DDDCRTMKEM IDRGDLKQVL LACAKAIAEN ESITAEWLIS  240
MVRPLVSVSG EPTQRLGAYL MEGLVARLSA SGSFIYKSLR CKEPTGPELF SYMHMLYEAC  300
PYFKFGYLSA NGAIAEAMKN EDRIHIIDFQ IAQGGQWATL IQALAALPGP PRLRITGIDD  360
SRNAYARGGG LEVVGQRLTK LAEACKLPFE FQGLPVSGSE IEARHFRIDP GEALAVNCAF  420
VLHHLPDESV DPQNHRDRML RLIKGLSPKV VTLVEQEANV NTAPFLHRFQ EALSYYSAMF  480
ESIDVTVPRD HKDRINVEQH CLAGEIVNII ACEGAEREER HELLGKWRSR FAMAGFTPYP  540
LSSYVNATIK TLLDNYCDKY RLEERDGALF LGWMNRDLVS SCAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-632185846374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748438.10.0scarecrow-like protein 21
RefseqXP_023748439.10.0scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2J6JIQ00.0A0A2J6JIQ0_LACSA; Uncharacterized protein
STRINGEOX934420.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]