PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017218

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

LBD

Protein Properties

Length: 279aa MW: 30520.4 Da PI: 6.6163

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-5176	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	102.1	5e-32	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e++ Lsa017218 4 SCNGCRVLRKGCSDNCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQLCQTAVEAV 103 6*************************************************************************************************99 PP DUF260 96 llkee 100 l++++ Lsa017218 104 LQGSP 108 98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	1.6E-92	1	267	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.03	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDNCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQTAV EAVLQGSPIT QIASDTAETN 120 KGPPFKAYDI RHISKDENSG AGSSELHRIR TRCRFKRSSA KGKASRVWIG SSDQEVSAQN 180 EHNNEFSSHG SALSHQSEAA HVVEDDNREM VEESLVSVET PLMSNKQAET EAAELDVKVE 240 LELTLGYEPV DKSKVKEATI AAAPKNSDAG VELRLDCPV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023769321.1	0.0	LOB domain-containing protein 41-like
Swissprot	Q9M886	3e-98	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2J6L1N7	0.0	A0A2J6L1N7_LACSA; Uncharacterized protein
STRING	XP_009607764.1	1e-112	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-100	LOB domain-containing protein 41