PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017208
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 361aa    MW: 39186.4 Da    PI: 6.6829
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682636PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_173.62.7e-23213275163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                e+elkrerrkq+NRe+ArrsR+RK+ae eeL+ kv++L++eN +Lk+e+++l+++++klk ++
  Lsa017208 213 ERELKRERRKQSNRESARRSRLRKQAEAEELAIKVDALTSENLTLKSEINRLTDNSQKLKLQN 275
                89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.6E-16185IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1704.1E-15207273No hitNo description
SMARTSM003383.0E-19213277IPR004827Basic-leucine zipper domain
PfamPF001702.2E-21213275IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.748215278IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-11216272No hitNo description
CDDcd147022.79E-18218265No hitNo description
PROSITE patternPS000360220235IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGNCEETTAC KPEKPSSPPP PPVTEHQQTS VHAYPDWAAM QAYYGHSMAV PPYFNSGHPP  60
PAYMWAPPQH MMPPYAAMYP HYPHPAGVPL ASPMSIDSPA KSSGNSERGL MKKLKGFDGL  120
AMSIGNGISH SGDTEASSQG SDGNTDTRKR SREVSPAEAG KISGHFFHKE PNGVTALTVV  180
TSDSEIKKSP TAVTMMTSAT AAMMPNQAQQ QNERELKRER RKQSNRESAR RSRLRKQAEA  240
EELAIKVDAL TSENLTLKSE INRLTDNSQK LKLQNAKLTE KLKNVQEEND TEDKSVSLST  300
ANLLSRVDSC TSEEGGSGND DEEEMVYTSS SNNNNNQNSN ATAKLRQLLD ASPRADAVAA  360
G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229235RRSRLRK
2229236RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746483.10.0common plant regulatory factor 1-like isoform X2
RefseqXP_023746484.10.0common plant regulatory factor 1-like isoform X3
SwissprotQ990891e-102CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A2J6JN510.0A0A2J6JN51_LACSA; Uncharacterized protein
STRINGXP_002511955.11e-107(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.23e-73G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]