PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017180

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

ERF

Protein Properties

Length: 290aa MW: 32336.1 Da PI: 5.0315

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-31151	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.7	1.6e-19	107	156	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ +++++g Lsa017180 107 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDEEARRIRG 156 69*****.******954...4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	2.1E-39	107	170	IPR001471	AP2/ERF domain
CDD	cd00018	1.42E-32	107	164	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.1E-32	107	165	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.854	107	164	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.14E-22	107	165	IPR016177	DNA-binding domain
Pfam	PF00847	3.8E-12	108	156	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.3E-12	108	119	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.3E-12	130	146	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MCGGAIISDF IAPTANRSRR LTTDLLRKTE FVKNPSKCYS KPIRSEIFDV EDEFEAAFQG 60 FKDEIEAEVV EHFVSPSNLS VSKGSGSKPV KSDNEPEKSS SRKRKNQYRG IRQRPWGKWA 120 AEIRDPRKGV RVWLGTFNTA EEAARAYDEE ARRIRGKKAK VNFPLEEKPE VNPIAAATTM 180 GIKPKLFTPS ESAAAVFHFN SDQGSNSFGC SDFGWGEHCV MTPDITSVFS EVDDVNPAKK 240 PEKVDESLFQ MPCFEGNWDA FLNGDAAQDD GNAVDLWSFN DLPVIMDGSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-22	107	165	2	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269\|PubMed:12913152}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023761977.1	0.0	ethylene-responsive transcription factor RAP2-12-like
Swissprot	Q6K7E6	8e-57	ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBL	A0A2J6LI37	0.0	A0A2J6LI37_LACSA; Uncharacterized protein
STRING	Migut.I01124.1.p	1e-96	(Erythranthe guttata)

Publications ? help Back to Top
Kim CY, et al. Identification of rice blast fungal elicitor-responsive genes by differential display analysis. Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4 [PMID:10755311] Koo SC, et al. OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33. Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70 [PMID:19607808] Iwamoto M,Takano M Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice. Biotechnol. Lett., 2011. 33(1): p. 173-8 [PMID:20872166] Serra TS, et al. OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Mol. Biol., 2013. 82(4-5): p. 439-55 [PMID:23703395] Jisha V, et al. Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice. PLoS ONE, 2015. 10(6): p. e0127831 [PMID:26035591] Lourenço TF, et al. The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors. Plant Physiol., 2015. 169(3): p. 2275-87 [PMID:26381316]