PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017160

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 249aa MW: 28487.2 Da PI: 6.5081

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58674618	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	124.4	1.4e-38	5	241	137	374
GRAS 137 egppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLkl 230 ++pp +R+T++ + + + ++ + +++ +fA+e ++++++n + l++l+ + ++ +p+E+l+V+ +++lh++ ++ +++r+e+Lk+ Lsa017160 5 GPPPLVRLTVLPPTSDDhqipfaNSPPGYNFISNILRFANEYKINLHINRIDNCPLQNLNANIIKSSPDETLIVCTQFRLHNVN---HNNPDNRTEFLKQ 101 5789*****9977778999997778888889999**********8666*************************8...66666788* PP GRAS 231 vkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 +++l+Pk v+++++++d+ + ++F ++f++ ++y ++++ds+++ + + r + Er+l++ e+++++ + ++ +e++ekW er++ +GF Lsa017160 102 IRNLEPKGVILSDNNMDCsckSCSNFETGFAKRVDYLWSFLDSTSVAF----KGRETEERKLMEGEASKALINVCEM----NERKEKWGERMRGVGFVGD 193 ***********8884234469***************9997....7888888888888888888887777....67788********** PP GRAS 328 plsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++e++++ a++llrk++ +++ r +e+++++ l Wk++p+ ++S W+ Lsa017160 194 VFREDVMDGARALLRKYDnNWELRTDESDKCVGLWWKGQPVSFCSLWK 241 **************99999999*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	16.219	1	220	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.8E-36	5	241	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
RGPGGPPPLV RLTVLPPTSD DHQIPFANSP PGYNFISNIL RFANEYKINL HINRIDNCPL 60 QNLNANIIKS SPDETLIVCT QFRLHNVNHN NPDNRTEFLK QIRNLEPKGV ILSDNNMDCS 120 CKSCSNFETG FAKRVDYLWS FLDSTSVAFK GRETEERKLM EGEASKALIN VCEMNERKEK 180 WGERMRGVGF VGDVFREDVM DGARALLRKY DNNWELRTDE SDKCVGLWWK GQPVSFCSLW 240 KLDVNTSDN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269\|PubMed:15961669, ECO:0000269\|PubMed:23077241}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269\|PubMed:15961669}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023772689.1	0.0	nodulation-signaling pathway 1 protein-like
Swissprot	Q4VYC8	1e-110	NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBL	A0A2J6KUF9	0.0	A0A2J6KUF9_LACSA; Uncharacterized protein
STRING	EOY27249	1e-120	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13840.1	4e-82	GRAS family protein

Publications ? help Back to Top
Cerri MR, et al. Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection. Plant Physiol., 2012. 160(4): p. 2155-72 [PMID:23077241] Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513]