PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa017109 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ZF-HD | ||||||||
Protein Properties | Length: 271aa MW: 29801.4 Da PI: 7.5864 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.2 | 3e-31 | 65 | 118 | 5 | 59 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 rY+eClkN Aa++Gg +DGCgEfmps g++gt +alkCaAC+CHRnFHR+e+++ Lsa017109 65 RYRECLKNYAANIGGSITDGCGEFMPS-GDDGTLEALKCAACNCHRNFHRKETTT 118 8*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-21 | 62 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.2E-29 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-28 | 65 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.064 | 66 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.36E-16 | 196 | 258 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-28 | 198 | 261 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.1E-28 | 199 | 255 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MEMSGTDKEI RMQTSSFPYN NHQLIHESSS EIMDHGSDPD RFDGSGASAT PISVGSRLLK 60 SPPPRYRECL KNYAANIGGS ITDGCGEFMP SGDDGTLEAL KCAACNCHRN FHRKETTTAA 120 AITAGPFLQL PPPLPSHSPL FNSHQRTSTS TVSLHHNPNW VSSINAPPVR IAVGGSGAAT 180 ESSSEELYFT AVPPYGVAKK RFRSKFTQDQ KEKMLEFAEK VGWRIPREDD PEVQRFCAEV 240 GVKRQVLKVW MHNNKAISGK KQVPDSNENI D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-24 | 200 | 255 | 18 | 73 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023742221.1 | 0.0 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_023742222.1 | 0.0 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9M9S0 | 1e-60 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A2J6JX76 | 0.0 | A0A2J6JX76_LACSA; Uncharacterized protein | ||||
STRING | EOY14784 | 2e-73 | (Theobroma cacao) |