PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016938
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family CO-like
Protein Properties Length: 425aa    MW: 47302.6 Da    PI: 6.34
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-1488PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13e-075592439
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htv 39
               + C+ ++   + lfC+++ ++lC  C ++ H g   H++
  Lsa016938 55 KPCDSCKTAVALLFCRKDTVFLCLACDVKMH-GdvrHER 92
               68*****************************.5588876 PP
2zf-B_box27.37.2e-0993138342
   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                 ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Lsa016938  93 VWMCEVCEQAPASVTCKADAAALCVTCDRDIHSAnplsrrHDRVPV 138
                689*****************************66899999999986 PP
3CCT70.25.2e-24342385144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Lsa016938 342 REARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 385
                9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.5995295IPR000315B-box-type zinc finger
SMARTSM003360.045288IPR000315B-box-type zinc finger
PfamPF006433.5E-65492IPR000315B-box-type zinc finger
CDDcd000211.59E-65695No hitNo description
PROSITE profilePS5011910.92191138IPR000315B-box-type zinc finger
SMARTSM003361.8E-1591138IPR000315B-box-type zinc finger
PfamPF006431.1E-693138IPR000315B-box-type zinc finger
CDDcd000215.45E-994138No hitNo description
PROSITE profilePS5101716.896342384IPR010402CCT domain
PfamPF062033.0E-18342384IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
XSGFLLINAI EDSTESKTVQ HFNYQNSKNI YIMRMQLETG GGLKCFPAGW NAPAKPCDSC  60
KTAVALLFCR KDTVFLCLAC DVKMHGDVRH ERVWMCEVCE QAPASVTCKA DAAALCVTCD  120
RDIHSANPLS RRHDRVPVVP FYDCADILMK SSACNFLELS SGNGNDDMNS SVTNDDDINW  180
GIPADTINID VKFPSDDSSP VDIKSIEMLF PESDHLLDFD FPVPTDTKFH SHFHNHDSVN  240
DSVVPFHVSP PAKHFPPPPE NQNRYEIDFT RSNINSFNKN SYLSQSLSHS VSSSSIDVGI  300
VPEGNSMSDV SHPFVLHVSG GGELNGATTG SQQATQLSGV DREARVMRYR EKRKNRKFEK  360
TIRYASRKAY AETRPRIKGR FAKRTESTDS DVDRWLFTAS TGVSAKSCYG GEVEYGVVPS  420
YCREF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746758.10.0zinc finger protein CONSTANS-LIKE 5-like
TrEMBLA0A2J6M9Y90.0A0A2J6M9Y9_LACSA; Uncharacterized protein
STRINGXP_007154800.11e-114(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.13e-93CONSTANS-like 5