PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa016912 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 811aa MW: 89004.4 Da PI: 6.2972 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.6e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+ Lsa016912 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLL 222 99*****************************8544444..48************************************************..8899999* PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ Lsa016912 223 LGIRRA 228 ***997 PP | |||||||
2 | Auxin_resp | 116.3 | 2.7e-38 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp rW nS+Wrs+k Lsa016912 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPNRWLNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.41E-49 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-42 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.90E-22 | 126 | 227 | No hit | No description |
PROSITE profile | PS50863 | 12.548 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-24 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-22 | 127 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-33 | 253 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.3E-8 | 676 | 773 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 4.77E-7 | 678 | 762 | No hit | No description |
PROSITE profile | PS51745 | 24.11 | 687 | 771 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 811 aa Download sequence Send to blast |
MKLSAVGFGQ QLPEGEKRCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAASTNKE 60 VDAHTPNYPS LPPQLVCQLH NVTMHADVET DEVYAQMTLQ PLNSDEQKEA FLPADLGAPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL 240 SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIC DLDPNRWLNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSQFP LRLKRPWPPG LPAYNGMKEE DLGMNSPIMW LRGGGGGGGG GDLGQSLNFQ 420 GLGGSPWLQP RFDGGGGGGI GMLGMQTTTD IYQAMAAAAL QEMRSIDSVK QSNPSLLQFQ 480 HQPIPTGSMS QPAFIPENQH VSLLPQLQPQ NPFTMGQFGS TSQSNFSDSN GNLLGPFSHD 540 ETSQLLNIPR SASLLTSTGW PAKRVAVDPL LVSGASQSLL HQVEQLGPPN TGLAQNTNLS 600 QTAVSLPPFP GRECSIDQEP NNNDPQSHNN ILFGVNIDNS NLLGLSNPFA SSNDFSMNPM 660 LTPSSCIDGS GFIQSQENTG QTNPPTRTFV KVYKSGCFGR SLDIAKFSSY HELRSELAQM 720 FGLEGQLEDP LRSGWQLVFV DRENDVLLLG DDPWPEFVSS VWCIKILSPQ EVQQMGKQGL 780 ELLNSVPIRT PSRQESMNLS TGVASVSSLE Y |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 16 | 357 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023733022.1 | 0.0 | auxin response factor 6 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | A0A2J6KHJ2 | 0.0 | A0A2J6KHJ2_LACSA; Auxin response factor | ||||
STRING | cassava4.1_001357m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |