PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016882
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ARF
Protein Properties Length: 990aa    MW: 109527 Da    PI: 6.5547
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58696525PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.11.5e-22134235199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l++
  Lsa016882 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQLLL 230
                99*****************************9445444.38************************************************..5688889** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +++r+
  Lsa016882 231 GIRRA 235
                **997 PP
2Auxin_resp110.91.2e-36260343183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v+YnPras+seFv++++k+ k++  +++s+GmRf+m+fete+s +rr++Gt++g+sdld vrW+nS+W +L+
   Lsa016882 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDGVRWKNSQWCNLQ 343
                 79******************************998669******************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-43122263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-41126249IPR015300DNA-binding pseudobarrel domain
CDDcd100175.99E-19133225No hitNo description
PROSITE profilePS5086311.97134236IPR003340B3 DNA binding domain
SMARTSM010196.1E-23134236IPR003340B3 DNA binding domain
PfamPF023621.2E-20134235IPR003340B3 DNA binding domain
PfamPF065075.0E-32260343IPR010525Auxin response factor
PROSITE profilePS5174527.511877961IPR000270PB1 domain
PfamPF023091.5E-6878962IPR033389AUX/IAA domain
SuperFamilySSF542771.37E-6889955No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 990 aa     Download sequence    Send to blast
MKTPANSSGS SLTTANPGEV GEKNRLINPE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLQS KLLCILHNVT LHADTETDEV YAQMTLQPVP SFDKEALLRS  120
DLLMKAHKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELVARDLH  180
DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPA  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKSVCSNQIS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD GVRWKNSQWC NLQVGWDEAT AGERRNRVSV  360
WEIEPVTAPF FICPTTPFYQ PKRSRQGMLG DESLDLDNIY KRTMPWIGED MSMKDPGLSL  420
VQWMNMQQNN QIQVQPNYLN PLTGSVLQNY NGQDLSRQLG LQQSQILTQN NLQFNHQKPP  480
QPAPTMMVQP PQFIDLTQQT TRQNPINQTQ IQSQNVLHQQ NFQQQQMAAA ASAAVVVVNQ  540
SQQKNNQFPD QQISQKMPEN QIQLLQKLHQ QQQSLLAQQD QSFPRSIPTT QMTEIPSQAP  600
IASLPQQTMR NNNNNNNSNE HNFRFSHLSQ QTKVTGPTNH LATNGSSLLT GTGTGIGISD  660
DIPSCSTSPS TNNSMVVPIM NSGSGMNTSG LEMISGNGNF GKFQQKPDVK PSVEVSKVQN  720
QGFLAPQTYL HNLGGPQMDY LDSSSSATSV CLSQNQISFS SSQALPFRDT IQDGEVQNDS  780
IPDIPFGVEM ASMIPEPLIT KGMKDFQNTI SSGGGGMISS YENPAKDTQP ELSSSMVSQS  840
FGVPDITFNS IDSTINDGGL LNGGVWAPPP QPFQRMRTYT KVYKRGAVGR SIDISAYSGY  900
YDLKQDLARR FGIEGQLEDR QRIGWKLVYV DHENDVLLVG DDPWEEFVNC VRCIKILSPQ  960
EVQQMSLDGD FGGNGVVPNQ ACSSSGGGKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1672136445388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770043.10.0auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A2J6L0220.0A0A2J6L022_LACSA; Auxin response factor
STRINGEOY321500.0(Theobroma cacao)