PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016760
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 314aa    MW: 34736.4 Da    PI: 6.1693
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58690942PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-22494PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-19139188255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ aeeAa a++ a+ kl+g
  Lsa016760 139 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDAAEEAALAYDIAAYKLRG 188
                59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.95E-33138198No hitNo description
SMARTSM003806.2E-37139202IPR001471AP2/ERF domain
PROSITE profilePS5103222.998139196IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-22139197IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-31139197IPR001471AP2/ERF domain
PfamPF008471.7E-12140188IPR001471AP2/ERF domain
PRINTSPR003671.7E-10140151IPR001471AP2/ERF domain
PRINTSPR003671.7E-10162178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MASATMEFWN VNDFQQSTGE LMDALGPFFK SNYDSTLAFS SPSTSYPYPS SSFSSSPSSS  60
SSPTQQESGF YPDGYTHGFS TQDPFGYDQS VSSFGLNQLT PSQIHQIQTQ INLPTYNNYL  120
APKPVPMKQS VSPPKPTKLY RGVRQRHWGK WVAEIRLPKN RTRLWLGTFD AAEEAALAYD  180
IAAYKLRGDY ARLNFPHLRH NGTHIGGEFG DYKPLHSSVD AKLQAICQTL AEGKSIDGGK  240
KKGSKRSTVA KPRTVVEQPE VVKVEGSESE VSGGSSPSSD LSFPEFTEEE SAWCGSDNFL  300
LEKYPSYEID WGSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20138196160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023772614.10.0ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E44e-93RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2J6KUI80.0A0A2J6KUI8_LACSA; Uncharacterized protein
STRINGXP_009615540.11e-104(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.16e-70related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]