PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa016738 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||||||
Protein Properties | Length: 251aa MW: 28147.1 Da PI: 8.2528 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.4 | 4.5e-12 | 80 | 126 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR+riN +++Lr l+P++ K++Ka+ L ++++ +k+L Lsa016738 80 KSHSDAERRRRERINAHLDTLRGLVPSN-----DKMDKATLLAEVIHQVKQL 126 58*************************8.....7************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.25 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-10 | 80 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.18E-11 | 80 | 127 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-12 | 80 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-12 | 81 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-10 | 83 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.7E-5 | 162 | 211 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDFYSPNHIF SNLESIVDDR FLGNLSGFNG DFENVDGLFS KSSQSLVLDE EKGELVKAQP 60 KVIGKKIGLI SEEKSLAALK SHSDAERRRR ERINAHLDTL RGLVPSNDKM DKATLLAEVI 120 HQVKQLKINA THASKGLLMP EDTDELKVEK LNNGGLVFHT SFCCKKRPEL LADVRRSLSS 180 LKVKIERAEL STLGDHVKMV FDFTKTSNGT MDEDIISSIH DAFTSVMEKG SISPEYSPRT 240 TLPNKRRRYS L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 90 | ERRRRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023736955.1 | 0.0 | transcription factor bHLH30-like | ||||
TrEMBL | A0A2J6MBZ1 | 0.0 | A0A2J6MBZ1_LACSA; Uncharacterized protein | ||||
STRING | XP_002522566.1 | 5e-71 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 4e-30 | bHLH family protein |