PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa016647 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||
Protein Properties | Length: 137aa MW: 14504.7 Da PI: 5.1472 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.9 | 8e-16 | 34 | 83 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y G+r ++ g+Wv+eIr+p +k+ r++lg++ t+e+Aa+a++ a+++l+ge Lsa016647 34 DYYGIR-CR-AGKWVSEIREP---NKSSRIWLGTYPTPEMAAAAYDVAALALKGE 83 677887.55.7*********9...336*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.81E-14 | 33 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.1E-26 | 34 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 34 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-24 | 34 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.795 | 34 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-18 | 35 | 92 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
XRHHSSSAFQ LPVPQDDDNP PPTPGGSSSS RDPDYYGIRC RAGKWVSEIR EPNKSSRIWL 60 GTYPTPEMAA AAYDVAALAL KGEYAILNFP DSTLSTTFPE FPTADDIRAA AARAAAARAP 120 TKESGGGSST EIGTTLS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023754774.1 | 5e-95 | ethylene-responsive transcription factor ERF027-like | ||||
Refseq | XP_023754775.1 | 5e-95 | ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ93 | 2e-26 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A2J6LYA1 | 1e-93 | A0A2J6LYA1_LACSA; Uncharacterized protein | ||||
STRING | VIT_16s0100g00400.t01 | 1e-31 | (Vitis vinifera) | ||||
STRING | XP_010278525.1 | 5e-32 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12630.1 | 4e-21 | ERF family protein |
Publications ? help Back to Top | |||
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