PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016616
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 490aa    MW: 57255.8 Da    PI: 9.7225
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-39693PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.39.9e-1217911398
               TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
               + +l++p  f+++ +gk ++  + +l++    +W+v +  + +    v+++GW++Fv +ng++e Df+vFk++g++ f   ++vf+
  Lsa016616 17 LFNLSVPSAFLTNLNGK-RC-LKAILRH-GRHKWSVDI--DDG----VFGDGWRKFVTENGVQEFDFIVFKHQGNMVF--DFMVFD 91
               56799999999777666.44.3444444.5589*****..444....79***********************999999..777776 PP
2B3551.5e-17150240396
                EE-..-HHHHTT-EE--HHH.HTT---...--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkke.esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   ++++v k++rl +p +fa+++g++++  ++ + l+d + r+W  +l  +k++ +  +t GW+eF   n+Lk+gD++ F+l+++ e  +v+k 
  Lsa016616 150 ESKITPYVIKKSRLHVPINFARSNGLITRwIHTPVYLMDDTQRTWPATL--TKTKTELCIT-GWREFIVKNHLKVGDVCRFELIKNGEL-PVFKC 240
                45679*******************8777667778***************..****9*9999.*********************996554.66665 PP
3B347.43.4e-15271353490
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                +l ++ +lk+ +l+lp +f + +g+k   + +++l+d +grsW+v l  + ++ +++l++G ++F  ang+kegD + F+l ++ +++
  Lsa016616 271 TL-KPTTLKRWILYLPADFSKPNGLK--IG-EMILRDDKGRSWKVHL-NKMNRTSFYLGGGLRSFLVANGMKEGDEFKFELLEKeKDK 353
                44.778889999***********999..44.7***************.3556666*************************87654655 PP
4B3551.5e-174044831395
                TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                ++ l lp kfa+++g+ +  ++++tl++ e+ rsW+v+l  +++++r y++++GWk+F  angLk gD + F+l + +++++ v 
  Lsa016616 404 KSVLFLPIKFAKSNGLMN--PRKMTLKNvEDERSWTVEL--ENYKNRyYYIGQGWKDFRVANGLKKGDRFKFELAN-NGENPIVN 483
                56799*********9884..557999998999*******..9999999*************************976.56666765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-15499IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-15495IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.151593IPR003340B3 DNA binding domain
CDDcd100172.30E-11791No hitNo description
SMARTSM010194.8E-10893IPR003340B3 DNA binding domain
PfamPF023621.3E-81689IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-18147239IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-19148244IPR003340B3 DNA binding domain
CDDcd100173.67E-13148242No hitNo description
PROSITE profilePS5086311.462148243IPR003340B3 DNA binding domain
SuperFamilySSF1019368.04E-17148239IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-15150241IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-16263350IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-14264349IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-11266350No hitNo description
SMARTSM010196.9E-14267363IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899267365IPR003340B3 DNA binding domain
PfamPF023623.3E-13271355IPR003340B3 DNA binding domain
SuperFamilySSF1019361.22E-17388484IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-17389481IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.142392487IPR003340B3 DNA binding domain
SMARTSM010195.9E-20393488IPR003340B3 DNA binding domain
CDDcd100176.11E-13402485No hitNo description
PfamPF023623.2E-15404484IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MADPPTHFFK FIPAGFLFNL SVPSAFLTNL NGKRCLKAIL RHGRHKWSVD IDDGVFGDGW  60
RKFVTENGVQ EFDFIVFKHQ GNMVFDFMVF DQSTCQKHYT NLFDELDEEP LTESDTICIH  120
RRKKLKKRKR NDYASQDKEI FQVDDSGCFE SKITPYVIKK SRLHVPINFA RSNGLITRWI  180
HTPVYLMDDT QRTWPATLTK TKTELCITGW REFIVKNHLK VGDVCRFELI KNGELPVFKC  240
YNTGKNLVEN DIQEKGTSSS TFTNHPYFIS TLKPTTLKRW ILYLPADFSK PNGLKIGEMI  300
LRDDKGRSWK VHLNKMNRTS FYLGGGLRSF LVANGMKEGD EFKFELLEKE KDKSPIANFL  360
FLKSKQQTKS HKEEKLSRKE GYILCEEDGH PYFMGEVKFC SIRKSVLFLP IKFAKSNGLM  420
NPRKMTLKNV EDERSWTVEL ENYKNRYYYI GQGWKDFRVA NGLKKGDRFK FELANNGENP  480
IVNFYFEKSC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127RKKLKKR
2122128KKLKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023768878.10.0B3 domain-containing protein REM17-like
TrEMBLA0A2J6L2V00.0A0A2J6L2V0_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.16e-40B3 family protein