PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016511
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 503aa    MW: 55970.6 Da    PI: 5.6586
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688588PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS391.11.3e-1191265031374
       GRAS   1 lvelLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                l+++L+ cA+ +++g ++  +++l++++++ +s +gdp+qRl ay++e+L+ar ++s+s +yk+l++ e s    ++ +++++++++++P++kf++  aN
  Lsa016511 126 LKQALILCAQSMDDGGAKeITETLMEHIQTKVSVTGDPIQRLGAYMLEGLRARKLSSGSAIYKKLKCYEPS---PKDLMSYMSTLYQICPYYKFAYTSAN 222
                5799*********966552777888999999***************************************9...789999999***************** PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  I ea++ e++vH+iDf i qG QW+ L++ La Rp+gppslR+Tgv++ +s+  ++  le++g+rLa++Ae+ gvpfef++ +a + ++++  +Lrv 
  Lsa016511 223 VVIKEAFQYENHVHVIDFLIAQGSQWVQLIEDLARRPGGPPSLRVTGVDDGDSSyaRAGGLEKVGQRLAQVAEANGVPFEFHA-AAISGSEVNWVNLRVY 321
                *************************************************988888899*************************.8999************ PP

       GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak......lpreseerikvErellg 291
                +gEalaVn+ ++lh+++desvs+ ++rd++++lvkslsPkvv++ eqe+++n++sF +rf ealeyy+a+f+s++ak      lpr ++ ri+ E+ +++
  Lsa016511 322 QGEALAVNFPYMLHHMPDESVSTVNHRDRLIRLVKSLSPKVVTLLEQESNTNTSSFSKRFEEALEYYTAMFESIDAKlpknieLPRGDRRRISAEENCVA 421
                *****************************************************************************66676677778************ PP

       GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                r+ vn+vace ++r+erhe l+kWr r+++aGF++ p+s+ +++ ++ +l++++ +gyr+ e++g+lvlgWk+rp+v++SaWr
  Lsa016511 422 RDMVNIVACEDTDRVERHEPLAKWRFRFQAAGFTASPISHAVVQAVQGVLSEYS-EGYRLGERDGALVLGWKNRPMVTCSAWR 503
                *****************************************************9.***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.406100484IPR005202Transcription factor GRAS
PfamPF035144.4E-117126503IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
XYPGDTVTSR HQETSIVSGN AFNDQFFTLE SSPALEIYNS PFTSVSSNTR SPFSPQGSSQ  60
SCVSNLHNSS PENTYGSPIS NEQFIRDVAM ELLGESDFED GSITSSFQNV NKNNKLLQIG  120
ISNLDLKQAL ILCAQSMDDG GAKEITETLM EHIQTKVSVT GDPIQRLGAY MLEGLRARKL  180
SSGSAIYKKL KCYEPSPKDL MSYMSTLYQI CPYYKFAYTS ANVVIKEAFQ YENHVHVIDF  240
LIAQGSQWVQ LIEDLARRPG GPPSLRVTGV DDGDSSYARA GGLEKVGQRL AQVAEANGVP  300
FEFHAAAISG SEVNWVNLRV YQGEALAVNF PYMLHHMPDE SVSTVNHRDR LIRLVKSLSP  360
KVVTLLEQES NTNTSSFSKR FEEALEYYTA MFESIDAKLP KNIELPRGDR RRISAEENCV  420
ARDMVNIVAC EDTDRVERHE PLAKWRFRFQ AAGFTASPIS HAVVQAVQGV LSEYSEGYRL  480
GERDGALVLG WKNRPMVTCS AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-491285036375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023738166.10.0scarecrow-like protein 13
SwissprotQ9M0M51e-180SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2J6K5L10.0A0A2J6K5L1_LACSA; Uncharacterized protein
STRINGXP_009629634.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13