PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016367
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 453aa    MW: 50433.7 Da    PI: 6.0162
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58690999PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-16543PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.37.7e-91564502373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                ++lL++cA+a++s+d++l q++L+ l+++a +dgd++qRl+  f++AL ar a+  +++ l +al+ s+ + ++++ ++  l  f++++P+++f++ +aN
  Lsa016367  56 EQLLVRCANAIESNDATLSQQILWVLNNIAPSDGDSNQRLTCGFLRALIARAAKtgTCKMLTAALSNSNITIQTHKFSIIELASFVDLTPWHRFGFTAAN 155
                79***************************************************9333444444444444444445555555566**************** PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......vakrledl 189
                 aIleaveg ++vHi+D+++++++Q p+L++a+a + egpp +++T  g+ e +      ++ e+g +L +fA++ ++ ++fnv+        ++ +e l
  Lsa016367 156 AAILEAVEGYSTVHIVDLSLTHCMQIPTLIDAMAGKLEGPPVVKLTIAGATEDVppmLDLSYDELGIKLVNFARSRNIILDFNVIpssssdgFSSLIEHL 255
                ***********************************************9998877987788999**********************887555555556666 PP

       GRAS 190 eleeLrvkp..gEalaVnlvlqlhrll.........desvsles........erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                +l++L   +  +Eal++n++++lh+++                         +r  +Lk+++sl+P++vv+++++ad +s++++ r+ +a++y +  +d 
  Lsa016367 256 KLQNLVHGNetNEALVINCHMMLHYIPeetptattsT------TpfsfedatPRALFLKQIRSLNPTLVVLADEDADFTSNNLVCRLRSAFNYLWIPYDI 349
                77777444377****************5555554442......0444444668899******************************************** PP

       GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                +++ lp+ s++r+++E+  +g++i+nv+a+eg +r+er e  ++W +r+++ GF+ v ++e++++++k +l +++  g+ +++e++ lvl+Wk++++v++
  Lsa016367 350 VDTFLPKGSKQRQWYEAD-IGWKIENVIAHEGLHRVERLEPRARWVQRMRNTGFRGVGFGEDIVTEVKGMLDEHA-AGWGLKKEEDDLVLTWKGHNVVFT 447
                ******************.********************************************************.8999******************** PP

       GRAS 371 SaW 373
                +aW
  Lsa016367 448 TAW 450
                *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.33529432IPR005202Transcription factor GRAS
PfamPF035142.7E-8856450IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MQFTETLPAP PLHLTTKPCQ NFTPMNPNQI HRTRPWPGFP APNKALGTFG DANCMEQLLV  60
RCANAIESND ATLSQQILWV LNNIAPSDGD SNQRLTCGFL RALIARAAKT GTCKMLTAAL  120
SNSNITIQTH KFSIIELASF VDLTPWHRFG FTAANAAILE AVEGYSTVHI VDLSLTHCMQ  180
IPTLIDAMAG KLEGPPVVKL TIAGATEDVP PMLDLSYDEL GIKLVNFARS RNIILDFNVI  240
PSSSSDGFSS LIEHLKLQNL VHGNETNEAL VINCHMMLHY IPEETPTATT STTPFSFEDA  300
TPRALFLKQI RSLNPTLVVL ADEDADFTSN NLVCRLRSAF NYLWIPYDIV DTFLPKGSKQ  360
RQWYEADIGW KIENVIAHEG LHRVERLEPR ARWVQRMRNT GFRGVGFGED IVTEVKGMLD  420
EHAAGWGLKK EEDDLVLTWK GHNVVFTTAW VPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-485045382475Protein SHORT-ROOT
5b3h_B6e-495045328421Protein SHORT-ROOT
5b3h_E6e-495045328421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023732448.10.0scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2J6KIM60.0A0A2J6KIM6_LACSA; Uncharacterized protein
STRINGVIT_07s0129g00340.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-178GRAS family protein