PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016336
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ARR-B
Protein Properties Length: 410aa    MW: 46475.9 Da    PI: 7.0848
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-51653PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.17.3e-27169222155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kprl Wt++LH++Fv av++L G +kA+P +il++m+v+ Lt ++v+SHLQkYR 
  Lsa016336 169 KPRLSWTKDLHNKFVAAVKHL-GVDKAIPTSILKVMNVENLTKQNVASHLQKYRG 222
                79*******************.********************************5 PP
2Response_reg76.97.4e-26201271108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+ +l+k +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll++   e  +lp+i+++++g+ + +++ +  Ga 
     Lsa016336  20 VLAVDDDPACLKILEALLRKCQY-HVTTTNQAVLALQMLRENKekFDLVISDVCMPDMDGFKLLEHVGLEM-DLPVIMLSSYGDTKHVTKGIYHGAC 114
                   799********************.***************887778**********************6644.8************************ PP

                   EEEESS--HHHHH CS
  Response_reg  96 dflsKpfdpeelv 108
                   d+l Kp+ +eel 
     Lsa016336 115 DYLLKPVRIEELK 127
                   **********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.6E-4117160No hitNo description
SuperFamilySSF521724.13E-3517142IPR011006CheY-like superfamily
SMARTSM004481.7E-3018130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.49519134IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.6E-2320127IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.28E-2821134No hitNo description
Gene3DG3DSA:1.10.10.604.6E-27166227IPR009057Homeodomain-like
PROSITE profilePS5129412.784166225IPR017930Myb domain
SuperFamilySSF466893.94E-18167226IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-22169221IPR006447Myb domain, plants
PfamPF002491.4E-6171221IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGVEPKSANE SDEFPVGMRV LAVDDDPACL KILEALLRKC QYHVTTTNQA VLALQMLREN  60
KEKFDLVISD VCMPDMDGFK LLEHVGLEMD LPVIMLSSYG DTKHVTKGIY HGACDYLLKP  120
VRIEELKLIW QHVIRRKIGK NRLDEVENVF SDKNEKPNKR RKDSSAQKKP RLSWTKDLHN  180
KFVAAVKHLG VDKAIPTSIL KVMNVENLTK QNVASHLQKY RGYLKRISHE ENQKGNMVIS  240
PNRRLDFAYL PTFIGYENQS LGKNSYPPNN XNWXKQVLLL VWVFLVFHLY PMIQENDSQK  300
LATTINLQEA PNVVDESILY PVTQNALGNL VCPIQSSCYV SNDGFTPMGN NVEGMIPPYS  360
TTYDGGVGSL EDIAAAMMRE EKGKGKVIVE GHSGYYDEVC YATSENYIYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22165228164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023732347.10.0two-component response regulator ARR12-like
SwissprotQ6K8X61e-99ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A2J6KIS00.0A0A2J6KIS0_LACSA; Uncharacterized protein
STRINGGLYMA04G06650.11e-103(Glycine max)
STRINGXP_007136967.11e-104(Phaseolus vulgaris)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]