PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016250
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 171aa    MW: 18035.6 Da    PI: 10.2226
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-149PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.2e-193973135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  Lsa016250 39 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 73
               ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-153385IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-133573No hitNo description
Gene3DG3DSA:3.30.50.101.3E-153873IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.36E-123873No hitNo description
PROSITE patternPS0034403964IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.2683969IPR000679Zinc finger, GATA-type
PfamPF003204.8E-173973IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MVDLSDKGSD CEDMMNSKNS PDRCGSSSSD GGSHLIKTCA DCGTTKTPLW RGGPAGPKSL  60
CNACGIRSRK KRRALLGLKD EKKQKKNTTN GTCAGAGATS TSGGDSQTSG LTSNKRSQMG  120
DFCLKRKLMA LGTEVVLQRP RSAITKQRRK IGEVEQAALL LMALSCGSVY A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023765657.11e-121GATA transcription factor 16
TrEMBLA0A2J6LA471e-108A0A2J6LA47_LACSA; Uncharacterized protein
STRINGXP_009590421.18e-51(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-38GATA transcription factor 15