PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa016168

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 421aa MW: 47200.8 Da PI: 6.3227

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58687506	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	206	252	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + E+ RR+++N +fe L+ l+P++ +K + a+++ A+eYI++L Lsa016168 206 TKHFATEKHRRQQLNGKFEALKGLVPNP-----TKADRASVVGDAIEYINEL 252 78************************.....9*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.83E-11	201	257	No hit	No description
SuperFamily	SSF47459	2.52E-15	201	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-13	201	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.805	203	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-10	206	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-11	209	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MLENSDMFEA SGCFDPNSVA HHQQVLIDHQ GDSFPQPHVS NFHQISNFSA IEAPADQLHH 60 QHLMNMDMDH QNHQQINWAH NPHDQVLIGN DNNCLPTPTP PDLLNLFQLP RCSSSICFSN 120 PTHIDQTSGQ VMFDPLLPHN LPPQPPFFRE LLNSLPNGFN LTGCGSIFGE MDMDRGEQNQ 180 LYHDGDAVLE FGGGIINGKG RENKDTKHFA TEKHRRQQLN GKFEALKGLV PNPTKADRAS 240 VVGDAIEYIN ELKRTVEELK ILVERKRCNR GRMKKHKTED DSTLDVESIY TKSNGGGSAG 300 AGDHAHDQQT YNGNSTSTMR SSWLQRKSKN TEIDVRIIDD EVTIKLVQQK RINCLFLVSK 360 VLHELQLDLH HVAGGLIGDF YSYLFNTKIC EGSSVYASAI ANKLIEVVDK QYATIPVTSS 420 Y

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MLENSDMFEA SGCFDPNSVA HHQQVLIDHQ GDSFPQPHVS NFHQISNFSA IEAPADQLHH  60
QHLMNMDMDH QNHQQINWAH NPHDQVLIGN DNNCLPTPTP PDLLNLFQLP RCSSSICFSN  120
PTHIDQTSGQ VMFDPLLPHN LPPQPPFFRE LLNSLPNGFN LTGCGSIFGE MDMDRGEQNQ  180
LYHDGDAVLE FGGGIINGKG RENKDTKHFA TEKHRRQQLN GKFEALKGLV PNPTKADRAS  240
VVGDAIEYIN ELKRTVEELK ILVERKRCNR GRMKKHKTED DSTLDVESIY TKSNGGGSAG  300
AGDHAHDQQT YNGNSTSTMR SSWLQRKSKN TEIDVRIIDD EVTIKLVQQK RINCLFLVSK  360
VLHELQLDLH HVAGGLIGDF YSYLFNTKIC EGSSVYASAI ANKLIEVVDK QYATIPVTSS  420
Y

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023735713.1	0.0	transcription factor bHLH10-like
TrEMBL	A0A2J6KB55	0.0	A0A2J6KB55_LACSA; Uncharacterized protein
STRING	VIT_15s0107g00380.t01	1e-122	(Vitis vinifera)