PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa016140 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||||||
Protein Properties | Length: 237aa MW: 26513.7 Da PI: 10.171 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.6 | 6.4e-13 | 168 | 207 | 2 | 45 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45 ++kGVr + +grW A Irdp++ + +++lg+f+t+eeA +a Lsa016140 168 QCKGVRKTE-SGRWSAKIRDPVK---KSQVWLGTFDTKEEASEA 207 69****888.7*********654...5**********8888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.642 | 81 | 143 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0035 | 92 | 149 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-8 | 93 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-6 | 95 | 141 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.738 | 168 | 225 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-11 | 168 | 220 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.0E-6 | 168 | 231 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-5 | 169 | 180 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.23E-13 | 170 | 207 | No hit | No description |
Pfam | PF00847 | 3.2E-5 | 170 | 207 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-15 | 170 | 220 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-5 | 191 | 207 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MADQPGVTKM ENSAEDDNKQ QMEATVTYPR KVRVIVSDPH ATDSSSDEGG NGERPSRRRI 60 VHEIVLGLRA GENKDDGEAS KRRGSMDEKE NERIRGKLCS EIRDPFNKKR VWFGTFDTAE 120 KSLKPYKIKK EKFRAGQAAE NQQVTPVSKG VPEGKKVAKL DDDPTRKQCK GVRKTESGRW 180 SAKIRDPVKK SQVWLGTFDT KEEASEAIES KKVEFGSKRT LSNAESGSSL KTPKTET |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023762511.1 | 1e-173 | ethylene-responsive transcription factor CRF6-like | ||||
TrEMBL | A0A2J6LGP4 | 1e-172 | A0A2J6LGP4_LACSA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 5e-13 | ERF family protein |