PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa016139 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | GRF | ||||||||
Protein Properties | Length: 282aa MW: 31293.3 Da PI: 9.7176 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.5 | 3.1e-25 | 206 | 250 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Lsa016139 206 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 250 79****************************************986 PP | |||||||
2 | QLQ | 65.2 | 1.6e-22 | 135 | 171 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy++an+PvP++Ll +++k Lsa016139 135 GPFTPSQWMELEHQALIYKYFVANVPVPSHLLTPLRK 171 59********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.2E-13 | 135 | 171 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.771 | 136 | 171 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.5E-15 | 136 | 169 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.954 | 206 | 250 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.4E-21 | 207 | 249 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MDFGITPFHN TQFFNHDEKT NGSGFNKQER SDPDPPDDQE LFLRTSKSSR TDYFDQPTKT 60 MSMRSDSLLS VSATDTNNML SFSSSSSSSS SAIKDANQSS LFSFYQPSPS YIRNTGYGYG 120 GLQTGMHMPV SRYKGPFTPS QWMELEHQAL IYKYFVANVP VPSHLLTPLR KSLNTFLFPA 180 TSSSTSYAPN SYGWGAFHLG FSGNTDPEPG RCRRTDGKKW RCSRDAVPDQ KYCERHINRG 240 RHRSRKPVEG QNGQANVSVP AKVGPVVSSS SSVPVSGSRT SX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023762284.1 | 0.0 | growth-regulating factor 1-like | ||||
Swissprot | O81001 | 3e-63 | GRF1_ARATH; Growth-regulating factor 1 | ||||
TrEMBL | A0A2J6LH64 | 0.0 | A0A2J6LH64_LACSA; Uncharacterized protein | ||||
STRING | XP_006466427.1 | 1e-82 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 7e-62 | growth-regulating factor 1 |
Publications ? help Back to Top | |||
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