PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016051
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 263aa    MW: 28768.5 Da    PI: 8.4652
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682190PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-24851PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19106156255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp   + k +r++lg+f++a +Aaka+++a+ kl+g
  Lsa016051 106 HYRGVRQRP-WGKFAAEIRDP---NkKGTRVWLGTFDSAIDAAKAYDRAAFKLRG 156
                7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-32105164IPR001471AP2/ERF domain
PROSITE profilePS5103223.868106164IPR001471AP2/ERF domain
PfamPF008471.2E-13106156IPR001471AP2/ERF domain
CDDcd000187.51E-32106164No hitNo description
SuperFamilySSF541711.44E-22106166IPR016177DNA-binding domain
SMARTSM003801.3E-37106170IPR001471AP2/ERF domain
PRINTSPR003671.2E-13107118IPR001471AP2/ERF domain
PRINTSPR003671.2E-13146166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MASPHESSTL DLIRQHLLID DLSFLQKYSL SHKSHIVSPT HSSSSQSSSL DSLLVNKSVS  60
SESGVSNGNN NSLKERKPSL KKLSIPFPPP PVVAPVKVDD VDERRHYRGV RQRPWGKFAA  120
EIRDPNKKGT RVWLGTFDSA IDAAKAYDRA AFKLRGSKAI LNFPLDIGYE EEAAEAPAAR  180
SSCRKRVVRE TETVDMESQK VPKVEPVTEE PVAVKTDAGV GPLTPSCWTA VWDFGEGNGK  240
GIFEVPPLSP YPNINFSSGC IVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-31105167163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753238.10.0ethylene-responsive transcription factor 5-like
SwissprotQ9LW482e-66ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLA0A2J6M1M40.0A0A2J6M1M4_LACSA; Uncharacterized protein
STRINGPGSC0003DMT4000279373e-66(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.19e-41ERF family protein