PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015941
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 415aa    MW: 46541.7 Da    PI: 6.8722
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58693198PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-35421PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.81.3e-09207264562
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  ++     l++e
  Lsa015941 207 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLMQRDTNGLTAE 264
                9*****************************************9998877766666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-15203267IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.68205268IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-10207258No hitNo description
Gene3DG3DSA:1.20.5.1707.5E-10207261No hitNo description
PfamPF001702.5E-8207256IPR004827Basic-leucine zipper domain
CDDcd147033.12E-25208257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEKDKSPNIG GNLLPPSGRH SVFSPQSGNN FGPKPEPSGS TTLPPSPIGH VASDSSPFSH  60
DISRMPDNPP KHLGHRRAHS EILTLPDDIS FDSDLGVVGG FNGPSFSDET EEDLFSMYLD  120
MDKLNSSSAT SSFQVGDSSS SGIQASEPAT LQPEKPRVRH QHSQSMDGST TIKPEMLTSG  180
PEETSSVDAK KSMSAAKLAE LALVDPKRAK RIWANRQSAA RSKERKMRYI AELERKVQTL  240
QTEATSLSAQ LTLMQRDTNG LTAENSELKM RLQTMEQQVH LQDALNDALK EEIQHLKVLT  300
GQNISNFPQT SFSSNHHQQP PQQQQFYSNN QAMNMNMNMN MNMNTMLTAQ QFQQLQIQSQ  360
KQQQQHHLHR QFQQHHQQQQ QQEHQFPAEM KQRNQMTNLP LKEHGADFNL HAPKD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748915.10.0probable transcription factor PosF21
RefseqXP_023748916.10.0probable transcription factor PosF21
SwissprotQ040881e-144POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2J6JHI50.0A0A2J6JHI5_LACSA; Uncharacterized protein
STRINGXP_008222595.11e-171(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-141bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]