PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa015863 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||||||
Family | ERF | ||||||||||||
Protein Properties | Length: 319aa MW: 35663.4 Da PI: 4.491 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 108 | 157 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Lsa015863 108 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 157 69*******.**********954...4************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.5E-37 | 108 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.96E-32 | 108 | 166 | No hit | No description |
SuperFamily | SSF54171 | 4.97E-22 | 108 | 166 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-32 | 108 | 167 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.907 | 108 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-12 | 109 | 120 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-12 | 109 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-12 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 319 aa Download sequence Send to blast |
MCGGAILSDI IAPTANRSRR LTADLLWSND FTKSSSNYFS NPPQSDAFDI DDEFEADFQG 60 FKDQVEIDQD NKPFAFSASK DSAPARGSRS VKSDDQVERS GSRKRKNQYR GIRQRPWGKW 120 AAEIRDPRKG VRVWLGTFNT AEEAARAYDA EARRIRGDKA KVNFPEKASP AKPKSRKPVY 180 KLGSVEEKPE ANPMPAAKPF IPSETAAFYF SSDQGSNSFD CSDFPWGENC VRTPEITSVL 240 SEVDEAIFME DPNPVKKPKT ESVNLVSDCE NTDDLFFEMP WDASSVDAFL NGDSTTQDCE 300 TVMDLWSFDD LPVMMNGGF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-21 | 108 | 165 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023758455.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q9SSA8 | 2e-66 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A2J6LQL2 | 0.0 | A0A2J6LQL2_LACSA; Uncharacterized protein | ||||
STRING | XP_008340186.1 | 1e-106 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G14230.3 | 1e-55 | related to AP2 2 |