PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015724
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 588aa    MW: 64255.6 Da    PI: 8.3498
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58693553PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-38184PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07237257526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C  Gd+C +aHg
  Lsa015724 237 PCPEFRK-GSCVNGDNCEYAHG 257
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.07E-1560141IPR020683Ankyrin repeat-containing domain
PfamPF127965.4E-1063132IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.54763138IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.3E-1663145IPR020683Ankyrin repeat-containing domain
SMARTSM002480.326393IPR002110Ankyrin repeat
CDDcd002042.77E-1465158No hitNo description
SMARTSM002481.5E-498130IPR002110Ankyrin repeat
PROSITE profilePS5008813.14398133IPR002110Ankyrin repeat
PRINTSPR014152.3E-599114IPR002110Ankyrin repeat
PRINTSPR014152.3E-5117131IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.104.7E-5231259IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-5232258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.953232259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4264295IPR000571Zinc finger, CCCH-type
SMARTSM0035636267290IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.446267291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MEGVRFQEKN FMVHLKCSNL LELAAADDVS GFVSEVEEKG IGLDEVGFWY GRSNSCKGKM  60
GFEERTSLMI ASVYGSIRVL KYLIATKKID VNKTSGSDGL TALHCAAAGG ALTSIEIVKL  120
LLDAGADVSL TDCNGNKPGD LIARGIKSSM RKGLEMLLKG FVIVEEIVAA KKEYPVDLSL  180
PDINNAVYGS DEFRMYTFKV KPCSRAYTHD WTECPFVHPG ENARRRDPKK YNYTCVPCPE  240
FRKGSCVNGD NCEYAHGVFE SWLHPAQYKT RLCKDETGCA RKVCFFAHKV DELRPLYAST  300
GSAIPSPKSS SVSSGEMVGS MSPSQNSVST PPMSPSIAPV SSMNGWPNKM NHLTPPVLQL  360
SGSRLRSALN ARDLELESLL TQQKQRQQMI DDLSANIYRN NQRFGELQGT NLDDVFGSFE  420
LQSPTGHQQI RQNSNQLRGN YTSSPMRKPA GFAFDSSAAV AQAVINSRSG AFSKQRSQSF  480
IDRGTAGSGA MSPQFSQWGS PDGKLEWGFN GEDANKLKKS ASFGFRNGVP MNEPAVSWAN  540
TLVKDVSSVG VGLYSSSEKQ RHGGTGGGGE KLPQWVEQMI REQERLVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023771055.10.0zinc finger CCCH domain-containing protein 47-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2J6KXP60.0A0A2J6KXP6_LACSA; Uncharacterized protein
STRINGPGSC0003DMT4000698880.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein