PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015528
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 343aa    MW: 38531.9 Da    PI: 5.7836
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29959988PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-12222PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-154491148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++  + G g+W+ Iar  g+ R++k+c++rw +yl
        Lsa015528 44 KGLWSPEEDEKLMNYMLRNGQGCWTDIARNAGLQRCGKSCRLRWINYL 91
                     678*******************************************97 PP
2Myb_DNA-binding42.12e-1397135141
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                      rg+++++E++l+v+++  lG++ W+ Ia++++ gRt++++k
        Lsa015528  97 RGAFSPQEEQLIVHLHSILGNR-WSQIAARLP-GRTDNEIK 135
                      89********************.*********.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.2593995IPR017930Myb domain
SuperFamilySSF466895.31E-2742135IPR009057Homeodomain-like
SMARTSM007176.3E-114393IPR001005SANT/Myb domain
PfamPF002494.9E-144491IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-224598IPR009057Homeodomain-like
CDDcd001674.72E-94791No hitNo description
SMARTSM007173.3E-996144IPR001005SANT/Myb domain
PROSITE profilePS5129414.32396146IPR017930Myb domain
PfamPF002495.9E-1297135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-2099136IPR009057Homeodomain-like
CDDcd001674.15E-899136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
XDFELLLSED YQYPIFVMRK PDPIMREKVC SNTNSNKGMV KLRKGLWSPE EDEKLMNYML  60
RNGQGCWTDI ARNAGLQRCG KSCRLRWINY LRPDLKRGAF SPQEEQLIVH LHSILGNRWS  120
QIAARLPGRT DNEIKKLLEL HDKEKVKKNN NVCRSSPNNS IDETSSDPSR DVMGAGMFMT  180
MHDHDLMAMC MDSSLTSTTT TSSSSMHNNS MIMKGHDQFG QLPSLLQTHI NRDTNGDSNL  240
FNVSPCLGEV GMGGDGGGYG DCGILEVPYM MGMENENSNP GSGAMDGDVN ANATKYMFEK  300
KSTNFNHHFS GEIDGKVKVE EVVGFENHWS GESLKMGEWD LEX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22381461108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023737129.10.0transcription factor MYB46-like
TrEMBLA0A2J6K8550.0A0A2J6K855_LACSA; Uncharacterized protein
STRINGPOPTR_0001s27430.12e-94(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.17e-61myb domain protein 46