PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015440
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 174aa    MW: 19706.8 Da    PI: 7.5693
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58670167PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.5e-194797255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               +y G+r+++ +g+++AeIrd +    + kr++lg+f+taeeAa a+++a  +++g
  Lsa015440 47 QYIGIRRRP-WGKFAAEIRDSTR---SgKRVWLGTFDTAEEAALAYDQALYSMKG 97
               799******.**********322...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.58E-2746106No hitNo description
SMARTSM003807.1E-3247111IPR001471AP2/ERF domain
PROSITE profilePS5103221.9747105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-2947106IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2147106IPR016177DNA-binding domain
PfamPF008472.4E-134797IPR001471AP2/ERF domain
PRINTSPR003674.8E-104859IPR001471AP2/ERF domain
PRINTSPR003674.8E-107187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
XICNFFVLGT QSHLLKMDFS SSSQEQYSQH KEVTNTERTE EGDKAKQYIG IRRRPWGKFA  60
AEIRDSTRSG KRVWLGTFDT AEEAALAYDQ ALYSMKGPSS VLNFPAEDVK ESLKGTNYYC  120
NKKDGESPAA AIKEMHRLRR TSLSSSSREK NKHQKDLVIL EDLGSDLLEE LLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2842107974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022006982.13e-71ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y91e-44ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2J6L6421e-112A0A2J6L642_LACSA; Uncharacterized protein
STRINGPGSC0003DMT4000378263e-51(Solanum tuberosum)
STRINGMigut.K00942.1.p8e-52(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-37ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]