PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015431

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 330aa MW: 36125.5 Da PI: 9.0193

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-38210	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.7e-10	41	84	2	45
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ++ k rr+++NReAAr+sR+RKka++++Le +L++ ++L Lsa015431 41 RDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 84 567899*************************9888888777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-8	37	87	No hit	No description
SMART	SM00338	6.1E-8	40	103	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.461	42	86	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.5E-7	43	85	IPR004827	Basic-leucine zipper domain
CDD	cd14708	5.94E-22	44	96	No hit	No description
SuperFamily	SSF57959	3.69E-7	44	87	No hit	No description
PROSITE pattern	PS00036	0	47	62	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.4E-30	127	201	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MAELSPRTDT STDGDTEDKA LGFHSGQSHG PVVSDASDKS RDQKTLRRLA QNREAARKSR 60 LRKKAYVQQL ESSRMKLTQL EQELQRARQQ GIFISSSGEQ SQSMSGNGAL AFDVXIWAVI 120 GGAQPPVNEL KGAVSNHAGD GELRIIVDGV VGHYEDIFRI KGDAAKADVF HVLSGMWKTP 180 AERCFLWLGG FRSSELLKLL ITQLEPLTEQ QLLAIGNLQQ SSQQAEDALS QGMEALQQSL 240 AETIAGSLAT SNPSSGANVA NYMGQMAMAM GKLGTLEGFI RQADNLRQQT LQQMHRILTT 300 RQSARALIAI NDYSSRLRAL SSLWLARPRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023740580.1	0.0	transcription factor HBP-1b(c38)-like
Swissprot	P23923	1e-173	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBL	A0A2J6K0N3	0.0	A0A2J6K0N3_LACSA; Uncharacterized protein
STRING	Migut.F00128.1.p	0.0	(Erythranthe guttata)

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143]