PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015262
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 343aa    MW: 38148.7 Da    PI: 5.1478
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58686272PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-3342PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.4e-18254287134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++C++ kTp+WR gp g+ktLCnaCG+++++ +
  Lsa015262 254 CTHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 287
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.7E-825337IPR016679Transcription factor, GATA, plant
SMARTSM004011.4E-12248302IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-13251311No hitNo description
PROSITE profilePS5011411.2252284IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-14252285IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.86E-14253310No hitNo description
PROSITE patternPS003440254279IPR000679Zinc finger, GATA-type
PfamPF003202.9E-16254287IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MECIEARALK SSFLSEIIHM KSTQQASFED LWCVAGLNNV VNVTADEFSV DDLLDLSDKD  60
FSTSGEESFE EDFASVSSQD NDSNSLNSSK FLTSGDIVSL PADQLPVPID DMESLEWLSQ  120
IVDDSVSELP VSCPEANLKD EAGQFPENRF EPVFQMSARS FTVLGLPYPV PKKGRTEKSR  180
KPGRVWSSGS RSLTESSSSS SSSHDLSATS PMLLTNPFHF IEFLEKPASA KKQRKNPVYQ  240
KGQVSSELIN QRRCTHCQVQ KTPQWRTGPL GPKTLCNACG VRFKSGRLFP EYRPACSPTF  300
SGDVHSNSHR KVLEMRKMKE TDVEPALNRQ AQRDSILLLD PVQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023755870.10.0GATA transcription factor 7-like
TrEMBLA0A2J6LVT30.0A0A2J6LVT3_LACSA; GATA transcription factor
STRINGXP_009802570.11e-92(Nicotiana sylvestris)