PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015216

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

G2-like

Protein Properties

Length: 379aa MW: 41512 Da PI: 7.6336

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58689332	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-52788	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.3	2.6e-31	221	276	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++ ++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Lsa015216 221 KARRCWSPELHRRFLHSLQQLGGAHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 276 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.515	218	278	IPR017930	Myb domain
SuperFamily	SSF46689	5.08E-17	219	279	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-27	219	279	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.5E-26	221	276	IPR006447	Myb domain, plants
Pfam	PF00249	7.6E-6	223	274	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MVFHNNSTDF GEKMQRCREY MEALESERRK IQVFERELPL CLELVTQAIE GCKQQMSGTT 60 TDYFNGQSEC SEQTSSEGPI LEEFIPMKRT SSAHDEEDQQ QQQQQFNHKP KVISTKDKSS 120 FPSKKSDWLR SAQLSIQTPD PVELSPKRVS VVEVTRNGCG AFHPFKKEKT SDTAPVAGTG 180 KLSPAPAAGP TAAASSTAET GSGNGGCGES KSEDKGQSNR KARRCWSPEL HRRFLHSLQQ 240 LGGAHVATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRP TPTIHNNNNP QTPQFVVVGG 300 IWMTPPEYTT MAATSTPTSG ETNNSKGVYA PIASHPPSLP EASMSLNKSN SGEKDGGHSH 360 EDSPSTSSST HTTTASPVF

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MVFHNNSTDF GEKMQRCREY MEALESERRK IQVFERELPL CLELVTQAIE GCKQQMSGTT  60
TDYFNGQSEC SEQTSSEGPI LEEFIPMKRT SSAHDEEDQQ QQQQQFNHKP KVISTKDKSS  120
FPSKKSDWLR SAQLSIQTPD PVELSPKRVS VVEVTRNGCG AFHPFKKEKT SDTAPVAGTG  180
KLSPAPAAGP TAAASSTAET GSGNGGCGES KSEDKGQSNR KARRCWSPEL HRRFLHSLQQ  240
LGGAHVATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRP TPTIHNNNNP QTPQFVVVGG  300
IWMTPPEYTT MAATSTPTSG ETNNSKGVYA PIASHPPSLP EASMSLNKSN SGEKDGGHSH  360
EDSPSTSSST HTTTASPVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-13	221	274	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-13	221	274	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-13	221	274	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-13	221	274	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-13	221	274	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-13	221	274	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-13	221	274	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-13	221	274	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-13	221	274	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-13	221	274	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-13	221	274	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-13	221	274	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023746281.1	0.0	transcription factor HHO3-like
Swissprot	Q9FPE8	1e-105	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A2J6JNH0	0.0	A0A2J6JNH0_LACSA; Uncharacterized protein
STRING	VIT_01s0011g03110.t01	1e-144	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-101	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]